Merge pull request #13 from virtualcell/trame-widgets

Add trame widgets for VTK visualization

Author: jcschaff

examples/notebooks/fielddata_trame.ipynb

@@ -0,0 +1,84 @@
+{
+ "cells": [
+  {
+   "metadata": {
+    "ExecuteTime": {
+     "end_time": "2025-03-21T23:23:46.759746Z",
+     "start_time": "2025-03-21T23:23:44.598316Z"
+    }
+   },
+   "cell_type": "code",
+   "source": [
+    "import os\n",
+    "from pathlib import Path\n",
+    "from pyvcell.sim_results.result import Result\n",
+    "from pyvcell.sim_results.widget import App\n",
+    "\n",
+    "out_dir_path = Path(os.getcwd()) / \"workspace\" / \"sim1_dir\"\n",
+    "zarr_path = out_dir_path / \"zarr\"\n",
+    "\n",
+    "result = Result(solver_output_dir=out_dir_path,\n",
+    "                  out_dir=out_dir_path,\n",
+    "                  sim_id=1072355302, job_id=0,\n",
+    "                  zarr_dir=zarr_path)\n",
+    "app = App(vtk_data=result.vtk_data)\n",
+    "# asyncio.get_event_loop().run_until_complete(app.run())\n",
+    "\n",
+    "await app.run()"
+   ],
+   "id": "92ac6f0eb409f41",
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "subdomain0::s0 VariableType.VOLUME\n",
+      "subdomain0::s1 VariableType.VOLUME\n",
+      "subdomain0_subdomain1_membrane::s2 VariableType.MEMBRANE\n",
+      "subdomain1::s3 VariableType.VOLUME\n",
+      "vcRegionVolume VariableType.VOLUME_REGION\n",
+      "vcRegionArea VariableType.MEMBRANE_REGION\n",
+      "vcRegionVolume_subdomain1 VariableType.MEMBRANE_REGION\n",
+      "vcRegionVolume_subdomain0 VariableType.MEMBRANE_REGION\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "HTML(value='<iframe id=\"trame_trame__template_main\" src=\"http://localhost:64932/index.html?ui=main&reconnect=a…"
+      ],
+      "application/vnd.jupyter.widget-view+json": {
+       "version_major": 2,
+       "version_minor": 0,
+       "model_id": "270ada65b2c14ffd938a2ba462df6087"
+      }
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "execution_count": 1
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.9.19"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}