updating universal libraries code #185
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| name: CD | |
| on: [push, workflow_dispatch] | |
| jobs: | |
| MacOS: | |
| name: native-build-${{ matrix.platform }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ macos-15-intel, macos-latest ] | |
| steps: | |
| - name: checkout vcell-ode repo | |
| uses: actions/checkout@v4 | |
| - name: Install MacOS dependencies <x86_64> | |
| if: matrix.platform == 'macos-15-intel' | |
| shell: bash | |
| run: | | |
| brew install conan | |
| conan --version | |
| mkdir -p ~/.conan2/profiles/ | |
| touch ~/.conan2/profiles/default # if we don't make a file first, cp thinks its a folder that doesn't exist | |
| cp conan-profiles/CI-CD/MacOS-AMD64_profile.txt ~/.conan2/profiles/default | |
| - name: Install MacOS dependencies <ARM> | |
| if: matrix.platform == 'macos-latest' | |
| shell: bash | |
| run: | | |
| brew install conan | |
| conan --version | |
| mkdir -p ~/.conan2/profiles/ | |
| touch ~/.conan2/profiles/default # if we don't make a file first, cp thinks its a folder that doesn't exist | |
| cp conan-profiles/CI-CD/MacOS-ARM64_profile.txt ~/.conan2/profiles/default | |
| - name: Install Dependencies through Conan on MacOS | |
| if: matrix.platform == 'macos-latest' || matrix.platform == 'macos-15-intel' | |
| shell: bash | |
| run: | | |
| conan install . --output-folder build --build=missing | |
| - name: Build Mac | |
| run: | | |
| echo "working dir is $PWD" | |
| cd build | |
| source conanbuild.sh | |
| cmake -B . -S .. -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Release | |
| cmake --build . --config Release | |
| - name: Test Mac | |
| run: | | |
| cd build | |
| ctest -VV | |
| echo "------ running SundialsSolverStandalone_x64 ------" | |
| ./bin/SundialsSolverStandalone_x64 || true | |
| - name: Make MacOS Shared Object Paths Relative | |
| shell: bash | |
| run: | | |
| mkdir build/upload | |
| cd build/bin | |
| rm unit_tests | |
| ls *_x64 | awk '{print $1}' | xargs -I '{}' otool -L '{}' | grep ")" | grep -v "build" | grep -v "System" | awk '{print $1}' | xargs -I '{}' cp -vn '{}' . || true | |
| ls *.dylib | awk '{print $1}' | xargs -I '{}' otool -L '{}' | grep ")" | grep -v "build" | grep -v "System" | awk '{print $1}' | xargs -I '{}' cp -vn '{}' . || true | |
| ls *.dylib | awk '{print $1}' | xargs -I '{}' otool -L '{}' | grep ")" | grep -v "build" | grep -v "System" | awk '{print $1}' | xargs -I '{}' cp -vn '{}' . || true | |
| chmod u+w,+x * | |
| tar czvf ../upload/mac64_bad_paths.tgz . | |
| ../../.github/scripts/install_name_tool_macos.sh | |
| tar czvf ../upload/mac64.tgz --dereference . | |
| - name: Upload Intel Macos binaries | |
| if: matrix.platform == 'macos-15-intel' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos_x86_64 | |
| path: build/upload/mac64.tgz | |
| - name: Upload ARM Macos binaries | |
| if: matrix.platform == 'macos-latest' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos_arm64 | |
| path: build/upload/mac64.tgz | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: false | |
| WindowsOS: | |
| name: native-build-${{ matrix.platform }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| #platform: [ windows-latest, windows-11-arm ] | |
| platform: [ windows-latest ] | |
| steps: | |
| - name: checkout vcell-ode repo | |
| uses: actions/checkout@v4 | |
| - name: Install Windows Dependencies (Part 0 - Setup LLVM-style) | |
| uses: llvm/actions/setup-windows@main | |
| with: | |
| arch: amd64 | |
| - name: Install Windows Dependencies (Part 1 - Configure Conan ...and zip) | |
| shell: powershell | |
| run: | | |
| choco install zip -y | |
| choco install conan -y | |
| $conanDir = "C:\Program Files\Conan\conan" | |
| $env:PATH = "$conanDir;$env:PATH" | |
| $conanDir | Set-Content -Path $env:GITHUB_PATH | |
| $env:CONAN_HOME = "C:\.conan" | |
| "CONAN_HOME=C:\.conan" | Out-File -FilePath $env:GITHUB_ENV -Append | |
| conan --version | |
| conan profile detect --force | |
| - name: Install Windows Dependencies (Part 2 - Reconfigure Conan) <x86_64> | |
| if: matrix.platform == 'windows-latest' | |
| shell: bash | |
| run: | | |
| cp conan-profiles/CI-CD/Windows-AMD64_profile.txt $CONAN_HOME/profiles/default | |
| - name: Install Windows Dependencies (Part 2 - Reconfigure Conan) <ARM> | |
| if: matrix.platform == 'windows-11-arm' | |
| shell: bash | |
| run: | | |
| cp conan-profiles/CI-CD/Windows-ARM64_profile.txt $CONAN_HOME/profiles/default | |
| - name: Install Dependencies through Conan on Windows | |
| shell: powershell | |
| run: | | |
| conan install . --output-folder build --build=missing -o include_messaging=False | |
| - name: Build Windows | |
| shell: powershell | |
| run: | | |
| cd build | |
| ./conanbuild.ps1 | |
| cmake -B . -S .. -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Release | |
| cmake --build . --config Release | |
| - name: Test Windows | |
| run: | | |
| cd build | |
| ctest -VV | |
| ./bin/SundialsSolverStandalone_x64 || true | |
| - name: Make Windows Shared Object Paths Relative | |
| shell: bash | |
| run: | | |
| mkdir build/upload | |
| cd build/bin | |
| rm unit_tests* *.pdb || true | |
| ls *.exe | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| # Currently, Sundials only requires system32 dlls! | |
| # ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| # ls *.dll | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep '=> /' | grep -v build | grep -iv windows | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| chmod u+w,+x * | |
| zip ../upload/win64.zip ./* | |
| cd ../.. | |
| # fi | |
| - name: Upload Windows (x86_64) binaries | |
| if: matrix.platform == 'windows-latest' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: win64_x86_64 | |
| path: build/upload/win64.zip | |
| - name: Upload Windows (ARMv8) binaries | |
| if: matrix.platform == 'windows-11-arm' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: win64_arm64 | |
| path: build/upload/win64.zip | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: false | |
| GNULinux: | |
| name: native-build-${{ matrix.platform }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ ubuntu-latest, ubuntu-24.04-arm ] | |
| steps: | |
| - name: checkout vcell-ode repo | |
| uses: actions/checkout@v4 | |
| - name: Install Linux Dependencies <x86_64> | |
| if: matrix.platform == 'ubuntu-latest' | |
| run: | | |
| sudo apt update | |
| sudo apt upgrade -y | |
| sudo apt install -y wget | |
| wget --version | |
| wget https://github.com/conan-io/conan/releases/download/2.22.2/conan-2.22.2-amd64.deb | |
| sudo apt install -y ./conan-*.deb | |
| conan --version | |
| mkdir -p ~/.conan2/profiles/ | |
| touch ~/.conan2/profiles/default # if we don't make a file first, cp thinks its a folder that doesn't exist | |
| cp conan-profiles/CI-CD/Linux-AMD64_profile.txt ~/.conan2/profiles/default | |
| - name: Install Linux Dependencies <ARM> | |
| if: matrix.platform == 'ubuntu-24.04-arm' | |
| run: | | |
| sudo apt update | |
| python3 -m pip install conan | |
| conan --version | |
| mkdir -p ~/.conan2/profiles/ | |
| touch ~/.conan2/profiles/default # if we don't make a file first, cp thinks its a folder that doesn't exist | |
| cp conan-profiles/CI-CD/Linux-ARM64_profile.txt ~/.conan2/profiles/default | |
| - name: Install Dependencies through Conan on Linux <x86_64> | |
| if: matrix.platform == 'ubuntu-latest' | |
| shell: bash | |
| run: | | |
| sudo apt --purge remove gcc | |
| sudo ln -s /usr/bin/clang /usr/bin/cc | |
| sudo apt install mold libc++-dev libc++abi-dev | |
| sudo rm /usr/bin/ld | |
| sudo ln -s $(which mold) /usr/bin/ld | |
| conan install -v trace . --output-folder build --build=missing | |
| - name: Install Dependencies through Conan on Linux <ARM> | |
| if: matrix.platform == 'ubuntu-24.04-arm' | |
| shell: bash | |
| run: | | |
| sudo apt --purge remove gcc | |
| sudo ln -s /usr/bin/clang /usr/bin/cc | |
| sudo ln -s /usr/bin/clang /usr/bin/gcc | |
| sudo ln -s /usr/bin/clang++ /usr/bin/g++ | |
| sudo apt install mold libc++-dev libc++abi-dev | |
| sudo rm /usr/bin/ld | |
| sudo ln -s $(which mold) /usr/bin/ld | |
| conan install . --output-folder build --build=missing | |
| - name: Build Linux | |
| run: | | |
| echo "working dir is $PWD" | |
| cd build | |
| source conanbuild.sh | |
| cmake -B . -S .. -G "Ninja" -DCMAKE_TOOLCHAIN_FILE="conan_toolchain.cmake" -DCMAKE_BUILD_TYPE=Release | |
| cmake --build . --config Release | |
| - name: Test Linux | |
| run: | | |
| cd build | |
| ctest -VV | |
| echo "------ running SundialsSolverStandalone_x64 ------" | |
| ./bin/SundialsSolverStandalone_x64 || true | |
| - name: Make Linux Shared Object Paths Relative | |
| shell: bash | |
| run: | | |
| mkdir build/upload | |
| cd build/bin | |
| rm unit_tests | |
| ls *_x64 | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep "=> /" | grep -v "build" | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| ls *.so | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep "=> /" | grep -v "build" | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| ls *.so | awk '{print $1}' | xargs -I '{}' ldd '{}' | grep "=> /" | grep -v "build" | awk '{print $3}' | xargs -I '{}' cp -vn '{}' . || true | |
| chmod u+w,+x * | |
| tar czvf ../upload/linux64.tgz --dereference . | |
| cd ../.. | |
| - name: Upload Linux (x86_64) binaries | |
| if: matrix.platform == 'ubuntu-latest' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: linux64_x86_64 | |
| path: build/upload/linux64.tgz | |
| - name: Upload Linux (ARMv8) binaries | |
| if: matrix.platform == 'ubuntu-24.04-arm' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: linux64_arm64 | |
| path: build/upload/linux64.tgz | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: false | |
| MacOS-Universal: | |
| name: Create Universal macOS Binary | |
| runs-on: macos-latest | |
| needs: | |
| - MacOS | |
| steps: | |
| # The binaries are "named" (ID'd) different as artifacts, but not as filenames (`mac64.tgz`). | |
| # As soon as we download one of them we need to rename it to avoid overwriting the other one. | |
| - name: Download macOS-Arm64 binary | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos_arm64 | |
| path: binaries | |
| - name: Unpack & Rename macOS-Arm64 binary | |
| run: | | |
| mkdir binaries/arm | |
| tar xzvf binaries/mac64.tgz -C binaries/arm | |
| rm binaries/mac64.tgz | |
| - name: Download macOS-x86_64 binary | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: macos_x86_64 | |
| path: binaries | |
| - name: Unpack & Rename macOS-x86_64 binary | |
| run: | | |
| mkdir binaries/intel | |
| tar xzvf binaries/mac64.tgz -C binaries/intel | |
| rm binaries/mac64.tgz | |
| # this will go in the log of the run, useful for debugging | |
| - name: Inspect binaries directory | |
| run: | | |
| echo "Contents of binaries/:" | |
| ls -Rlh binaries/ | |
| # - name: Setup tmate session for inspection | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: Combine with lipo | |
| run: | | |
| mkdir binaries/universal | |
| for exe in `ls binaries/arm/ | grep "*.x64"` | |
| do | |
| echo "fixing ${exe}..." | |
| lipo -create binaries/arm/$exe binaries/intel/$exe \ | |
| -output binaries/universal/$exe | |
| done | |
| for dylib in `ls binaries/arm/ | grep "*.dylib"` | |
| do | |
| echo "fixing ${dylib}..." | |
| lipo -create binaries/arm/$dylib binaries/intel/$dylib \ | |
| -output binaries/universal/$dylib | |
| done | |
| for entry in `ls binaries/universal/*` | |
| do | |
| echo "confirming ${entry}..." | |
| lipo -archs binaries/universal/$entry | |
| done | |
| mv binaries/universal binaries/mac64 | |
| tar czvf binaries/macos-universal.tgz binaries/mac64 | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: false | |
| - name: Inspect binaries directory | |
| run: | | |
| echo "Contents of binaries/:" | |
| ls -Rlh binaries/ | |
| - name: Upload MacOS (Universal) binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos64_universal | |
| path: binaries/macos-universal.tgz | |
| # - name: Upload universal binary to release | |
| # if: github.event_name == 'release' | |
| # uses: actions/upload-release-asset@v1 | |
| # env: | |
| # GITHUB_TOKEN: ${{ github.token }} | |
| # with: | |
| # upload_url: ${{ github.event.release.upload_url }} | |
| # asset_path: binaries/macos-universal.tgz | |
| # asset_name: macos-universal | |
| # asset_content_type: application/octet-stream | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: false |