Fix bugs

Author: keller-mark

pyproject.toml

@@ -31,12 +31,12 @@ dependencies = [
   'black>=21.11b1',
   'numpy>=1.21.2',
   'zarr>=2.5.0,<3',
-  'numcodecs>=0.5.7',
-  'anndata>=0.7.8',
+  'numcodecs>=0.5.7,<0.16.0',
+  'anndata>=0.7.8,<0.11.0',
   # scanpy < 1.10.3 does not support numpy >= 2.0.0 and does not
   # Reference: https://github.com/scverse/scanpy/pull/3115/files
   'scanpy>=1.10.2',
-  'ome-zarr<9',
+  'ome-zarr<0.10.3',
   'tifffile>=2020.10.1',
   'jsonschema>=3.2',
   'tqdm>=4.1.0',

src/vitessce/wrappers.py

@@ -130,10 +130,13 @@ def get_artifacts(self):
     def try_getting_artifact_stores(self):
         artifact_stores = dict()
         for artifact_url, artifact in self.artifacts.items():
-            local_path = artifact._local_filepath
-            if local_path is not None and os.path.isdir(local_path):
-                store = zarr.DirectoryStore(local_path)
-                artifact_stores[artifact_url] = store
+            if hasattr(artifact, "_local_filepath"):
+                # The attribute ._local_filepath is deleted upon running .save()
+                # Reference: https://github.com/laminlabs/lamindb/blob/58ee954c9f363524e2c47b358727f0b921467078/lamindb/models/save.py#L167
+                local_path = artifact._local_filepath
+                if local_path is not None and os.path.isdir(local_path):
+                    store = zarr.DirectoryStore(local_path)
+                    artifact_stores[artifact_url] = store
         return artifact_stores
 
     def get_stores(self, base_url, prefer_local=False):