Linting

Author: tkakar

src/vitessce/wrappers.py

@@ -1274,7 +1274,6 @@ def __init__(self, adata_path=None, adata_url=None, adata_store=None, adata_arti
 
         self.local_dir_uid = make_unique_filename(".adata.zarr")
         self.local_file_uid = make_unique_filename(".h5ad")
-        self.local_file_uid_zarr = make_unique_filename('.zarr.zip')
         self.local_ref_uid = make_unique_filename(".ref.json")
 
         self._expression_matrix = obs_feature_matrix_path
@@ -1362,7 +1361,6 @@ def get_anndata_zarr(base_url):
             if len(options.keys()) > 0:
                 if self.is_h5ad:
                     options["refSpecUrl"] = self.get_ref_url(base_url, dataset_uid, obj_i)
-                print(ft.ANNDATA_ZIPPED_ZARR.value)
                 obj_file_def = {
                     "fileType": ft.ANNDATA_ZIPPED_ZARR.value if self.is_zip else ft.ANNDATA_H5AD.value if self.is_h5ad else ft.ANNDATA_ZARR.value,
                     "url": self.get_zarr_url(base_url, dataset_uid, obj_i) if not self.is_h5ad else self.get_h5ad_url(base_url, dataset_uid, obj_i),

tests/test_config.py

@@ -75,11 +75,12 @@ def test_config_add_dataset():
         "initStrategy": "auto"
     }
 
+
 def test_config_add_anndata_zip_url():
     vc = VitessceConfig(schema_version="1.0.15")
     vc.add_dataset(name='My Dataset').add_object(
         AnnDataWrapper(
-            adata_url="http://example.com/adata.h5ad.zarr.zip",
+            adata_url="http://example.com/adata.zarr.zip",
             obs_set_paths=["obs/louvain"],
         )
     )
@@ -97,7 +98,7 @@ def test_config_add_anndata_zip_url():
                 'files': [
                     {
                         "fileType": "anndata.zarr.zip",
-                        "url": "http://example.com/adata.h5ad.zarr.zip",
+                        "url": "http://example.com/adata.zarr.zip",
                         "options": {
                             "obsSets": [
                                 {

tests/test_wrappers.py

@@ -209,7 +209,7 @@ def test_obs_segmentations_ome_zarr(self):
         })
 
     def test_anndata_with_zip(self):
-        adata_path = data_path / 'test.h5ad.zarr.zip'
+        adata_path = data_path / 'test.zarr.zip'
         w = AnnDataWrapper(adata_path,
                            obs_set_paths=['obs/CellType'], obs_set_names=['Cell Type'],
                            obs_labels_names=['Cell Label'], obs_labels_paths=['obs/CellLabel'],