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Fix spatialdata configuration
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docs/notebooks/spatial_data.ipynb

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -94,8 +94,8 @@
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" sdata_path=spatialdata_filepath,\n",
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" # The following paths are relative to the root of the SpatialData zarr store on-disk.\n",
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" image_path=\"images/CytAssist_FFPE_Human_Breast_Cancer_full_image\",\n",
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" table_path=\"table/table\",\n",
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" obs_feature_matrix_path=\"table/table/X\",\n",
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" table_path=\"tables/table\",\n",
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" obs_feature_matrix_path=\"tables/table/X\",\n",
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" obs_spots_path=\"shapes/CytAssist_FFPE_Human_Breast_Cancer\",\n",
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" region=\"CytAssist_FFPE_Human_Breast_Cancer\",\n",
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" coordinate_system=\"global\",\n",
@@ -163,7 +163,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.9.0"
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"version": "3.10.14"
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}
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},
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"nbformat": 4,

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