Update

Author: keller-mark

docs/notebooks/spatial_data_mouseliver.ipynb

@@ -7,18 +7,17 @@
     "tags": []
    },
    "source": [
-    "# Interactive visualization of Lamin Artifacts using Vitessce"
+    "# Interactive visualization of spatial single-cell data using Vitessce"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "This blog post explains how to create interactive visualizations of data that is accessible via Lamin Hub using [Vitessce](https://vitessce.io/).\n",
-    "Vitessce is an open-source tool designed for interactive visualization of single-cell, spatial 'omics, and bioimaging datasets.\n",
+    "This notebook explains how to create interactive visualizations of data that is accessible locally.\n",
     "\n",
     "\n",
-    "In this post, we progress through different visualization tasks, first demonstrating how Vitessce facilitates integrated imaging and spatial single-cell visualizations, then demonstrating visualization of non-spatial and image-only datasets."
+    "We progress through different visualization tasks, first demonstrating how Vitessce facilitates integrated imaging and spatial single-cell visualizations, then demonstrating visualization of non-spatial and image-only datasets."
    ]
   },
   {
@@ -126,7 +125,9 @@
    "source": [
     "In this blog post, we perform basic data transformation tasks to save individual elements of an integrated SpatialData object to separate files in AnnData, OME-TIFF, and OME-Zarr formats.\n",
     "To perform these data transformations, we import the following dependencies.\n",
-    "In general, you will typically not need to import all of these dependencies, either because you are only working with data in one of these formats, or because the data you intend to visualize is already saved to a file or directory."
+    "In general, you will typically not need to import all of these dependencies, either because you are only working with data in one of these formats, or because the data you intend to visualize is already saved to a file or directory.\n",
+    "\n",
+    "Note: Dependencies such as `spatialdata` may need to be installed before they can be imported in the next code cell."
    ]
   },
   {