Versions of anndata, anywidget, JS package (#328)

* Versions of anndata and anywidget

* Update test

* Revert numeric changes

Author: keller-mark

pyproject.toml

@@ -32,7 +32,7 @@ dependencies = [
   'pandas>=1.1.2',
   'black>=21.11b1',
   'numpy>=1.21.2',
-  'anndata>=0.7.8,<0.9',
+  'anndata>=0.7.8,<0.11',
   'scanpy>=1.9.3',
   'ome-zarr==0.8.3',
   'tifffile>=2020.10.1',
@@ -73,7 +73,7 @@ docs = [
 ]
 all = [
   'jupyter-server-proxy>=1.5.2',
-  'anywidget==0.4.2',
+  'anywidget>=0.9.3',
   'uvicorn>=0.17.0',
   'ujson>=4.0.1',
   'starlette==0.14.0',

tests/test_anndata_utils.py

@@ -84,12 +84,12 @@ def test_to_uint8(self):
     def test_to_uint8_global_norm(self):
         adata = self.adata
         norm_X = to_uint8(adata.X, norm_along="global")
-        assert norm_X.tolist() == [[255, 200, 250], [250, 50, 255], [104, 50, 100], [200, 70, 205]]
+        np.testing.assert_almost_equal(norm_X.tolist(), [[255, 200, 250], [250, 50, 255], [104, 50, 100], [200, 70, 205]], decimal=0)
 
     def test_to_uint8_gene_norm(self):
         adata = self.adata
         norm_X = to_uint8(adata.X, norm_along="var")
-        assert norm_X.tolist() == [[255, 255, 246], [246, 0, 254], [0, 0, 0], [161, 33, 172]]
+        np.testing.assert_almost_equal(norm_X.tolist(), [[255, 255, 246], [246, 0, 254], [0, 0, 0], [161, 33, 172]], decimal=0)
 
     def test_to_uint8_cell_norm(self):
         adata = self.adata

vitessce/widget.py

@@ -194,7 +194,7 @@ def get_uid_str(uid):
   };
 }
 
-export async function render(view) {
+async function render(view) {
     const cssUid = view.model.get('uid');
     const jsDevMode = view.model.get('js_dev_mode');
     const jsPackageVersion = view.model.get('js_package_version');
@@ -339,6 +339,7 @@ def get_uid_str(uid):
         }
     };
 }
+export default { render };
 """
 
 DEFAULT_PLUGIN_ESM = """
@@ -382,13 +383,13 @@ class VitessceWidget(anywidget.AnyWidget):
 
     next_port = DEFAULT_PORT
 
-    js_package_version = Unicode('3.3.6').tag(sync=True)
+    js_package_version = Unicode('3.3.7').tag(sync=True)
     js_dev_mode = Bool(False).tag(sync=True)
     custom_js_url = Unicode('').tag(sync=True)
     plugin_esm = Unicode(DEFAULT_PLUGIN_ESM).tag(sync=True)
     remount_on_uid_change = Bool(True).tag(sync=True)
 
-    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.3.6', js_dev_mode=False, custom_js_url='', plugin_esm=DEFAULT_PLUGIN_ESM, remount_on_uid_change=True):
+    def __init__(self, config, height=600, theme='auto', uid=None, port=None, proxy=False, js_package_version='3.3.7', js_dev_mode=False, custom_js_url='', plugin_esm=DEFAULT_PLUGIN_ESM, remount_on_uid_change=True):
         """
         Construct a new Vitessce widget.
 
@@ -462,7 +463,7 @@ def close(self):
 # Launch Vitessce using plain HTML representation (no ipywidgets)
 
 
-def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.3.6', js_dev_mode=False, custom_js_url='', plugin_esm=DEFAULT_PLUGIN_ESM, remount_on_uid_change=True):
+def ipython_display(config, height=600, theme='auto', base_url=None, host_name=None, uid=None, port=None, proxy=False, js_package_version='3.3.7', js_dev_mode=False, custom_js_url='', plugin_esm=DEFAULT_PLUGIN_ESM, remount_on_uid_change=True):
     from IPython.display import display, HTML
     uid_str = "vitessce" + get_uid_str(uid)