Update nb

Author: keller-mark

docs/notebooks/spatial_data_merfish_2.ipynb

@@ -100,7 +100,7 @@
     "    coordinate_system=\"global\",\n",
     "    coordination_values={\n",
     "        # The following tells Vitessce to consider each observation as a \"spot\"\n",
-    "        \"obsType\": \"spot\",\n",
+    "        \"obsType\": \"cell\",\n",
     "    }\n",
     ")\n",
     "dataset = vc.add_dataset(name='MERFISH').add_object(wrapper)\n",
@@ -111,6 +111,12 @@
     "layer_controller = vc.add_view(\"layerControllerBeta\", dataset=dataset)\n",
     "obs_sets = vc.add_view(\"obsSets\", dataset=dataset)\n",
     "\n",
+    "vc.link_views_by_dict([spatial, layer_controller], {\n",
+    "    'spotLayer': CL([{\n",
+    "        'obsType': 'cell',\n",
+    "    }]),\n",
+    "}, scope_prefix=get_initial_coordination_scope_prefix(\"A\", \"obsSpots\"))\n",
+    "\n",
     "vc.link_views([spatial, layer_controller, feature_list, obs_sets], ['obsType'], [wrapper.obs_type_label])\n",
     "\n",
     "# Layout the views\n",