sagemath: update to 10.8.

Author: dkwo

srcpkgs/sagemath/patches/40594-Fix_segfault_in_libgap.patch

@@ -0,0 +1,22 @@
+diff --git a/src/sage/interfaces/maxima_lib.py b/src/sage/interfaces/maxima_lib.py
+index 637ef29a6f2..8b5bf5a6d4f 100644
+--- a/src/sage/interfaces/maxima_lib.py
++++ b/src/sage/interfaces/maxima_lib.py
+@@ -210,7 +210,7 @@
+ if MAXIMA_SHARE:
+     import_packages = "{affine,algebra,algebra/charsets,algebra/solver,amatrix,bernstein,calculus,cobyla,cobyla/ex,cobyla/lisp,colnew,colnew/ex1,colnew/ex2,colnew/ex3,colnew/ex4,colnew/lisp,combinatorics,contrib,contrib/Eulix,contrib/Grobner,contrib/Zeilberger,contrib/alt-display,contrib/altsimp,contrib/binsplit,contrib/bitwise,contrib/boolsimp,contrib/coma,contrib/diffequations,contrib/diffequations/tests,contrib/elliptic_curves,contrib/elliptic_curves/figures,contrib/format,contrib/fresnel,contrib/gentran,contrib/gentran/man,contrib/gentran/test,contrib/gf,contrib/integration,contrib/levin,contrib/lurkmathml,contrib/maxima-odesolve,contrib/maximaMathML,contrib/mcclim,contrib/noninteractive,contrib/odes,contrib/operatingsystem,contrib/prim,contrib/rand,contrib/rkf45,contrib/sarag,contrib/smath,contrib/state,contrib/symplectic_ode,contrib/trigtools,contrib/unicodedata,contrib/unit,contrib/vector3d,descriptive,diff_form,diff_form/tests,diffequations,distrib,draw,dynamics,ezunits,fftpack5,fftpack5/lisp,finance,fourier_elim,fractals,graphs,hompack,hompack/lisp,hypergeometric,integequations,integer_sequence,integration,lapack,lapack/blas,lapack/lapack,lbfgs,linearalgebra,logic,lsquares,macro,matrix,minpack,minpack/lisp,misc,mnewton,multiadditive,nelder_mead,numeric,numericalio,odepack,odepack/src,orthopoly,pdiff,physics,pslq,pytranslate,quantum,simplex,simplex/Tests,simplification,solve_rat_ineq,solve_rec,sound,stats,stringproc,sym,tensor,tensor/tracefree-code,test_batch_encodings,to_poly_solve,translators,translators/m2mj,trigonometry,utils,vector,z_transform}"
+     ecl_eval(f'#$file_search_maxima: append(file_search_maxima, ["{MAXIMA_SHARE}/###.{{mac,mc,wxm}}", "{MAXIMA_SHARE}/{import_packages}/###.{{mac,mc,wxm}}"])$')
+-    ecl_eval(f'#$file_search_lisp: append(file_search_lisp, ["{MAXIMA_SHARE}/###.{{fas,lisp,lsp}}", "{MAXIMA_SHARE}/{import_packages}/###.{{fas,lisp,lsp}}"])$')
++    ecl_eval(f'#$file_search_lisp: append(file_search_lisp, ["{MAXIMA_SHARE}/###.{{fas,lisp,lsp}}", "{MAXIMA_SHARE}/../src/###.{{fas,lisp,lsp}}", "{MAXIMA_SHARE}/{import_packages}/###.{{fas,lisp,lsp}}"])$')
+ 
+ # Default options set in Maxima
+ # display2d -- no ascii art output
+diff --git a/subprojects/packagefiles/maxima/build/doc/info/meson.build b/subprojects/packagefiles/maxima/build/doc/info/meson.build
+new file mode 100644
+index 00000000000..e8c69f73526
+diff --git a/subprojects/packagefiles/maxima/build/doc/meson.build b/subprojects/packagefiles/maxima/build/doc/meson.build
+new file mode 100644
+index 00000000000..eba36e4bdc3
+diff --git a/subprojects/packagefiles/maxima/build/meson.build b/subprojects/packagefiles/maxima/build/meson.build
+new file mode 100644
+index 00000000000..4112780103d

srcpkgs/sagemath/patches/40816-Meson:_Build_docs_for_Maxima_as_well.patch

@@ -0,0 +1,22 @@
+diff --git a/src/sage/topology/simplicial_set_examples.py b/src/sage/topology/simplicial_set_examples.py
+index be7a4084be2..cd69adb9c5a 100644
+--- a/src/sage/topology/simplicial_set_examples.py
++++ b/src/sage/topology/simplicial_set_examples.py
+@@ -655,7 +655,7 @@ def simplicial_data_from_kenzo_output(filename) -> dict:
+         sage: S4.homology(reduced=False)                                                # needs pyparsing
+         {0: Z, 1: 0, 2: 0, 3: 0, 4: Z}
+     """
+-    from pyparsing import OneOrMore, nestedExpr
++    from pyparsing import OneOrMore, nested_expr
+ 
+     with open(filename) as f:
+         data = f.read()
+@@ -675,7 +675,7 @@ def simplicial_data_from_kenzo_output(filename) -> dict:
+             end = new_dim_idx
+         if dim == 0:
+             simplex_string = data[data.find('Vertices :') + len('Vertices :'):end]
+-            vertices = OneOrMore(nestedExpr()).parseString(simplex_string).asList()[0]
++            vertices = OneOrMore(nested_expr()).parse_string(simplex_string).asList()[0]
+             for v in vertices:
+                 vertex = AbstractSimplex(0, name=v)
+                 simplex_data[vertex] = None

srcpkgs/sagemath/patches/41021-Refactor_atexit.pyx_for_python_3.14.patch

@@ -1,6 +1,6 @@
 #! /bin/sh
 
-version=10.7
+version=10.8
 
 URL_BASE_PR="https://github.com/sagemath/sage/pull/"
 URL_BASE_COMPARE="https://github.com/sagemath/sage/compare/${version}..."
@@ -30,7 +30,6 @@ get_pr() {
 # run from patches dir
 cd $(dirname "$0")
 
-# positive review
-get_pr 40594 "Fix segfault in libgap"
-get_pr 41021 "Refactor atexit.pyx for python 3.14"
-get_pr 41141 "Fix compatibility issue for ipython 9.7.0"
+# draft/under review
+get_pr 40816 "Meson: Build docs for Maxima as well"
+get_pr 41395 "Fix test failures with pyparsing 3.3" 

srcpkgs/sagemath/patches/41141-Fix_ipython_9.7.0.patch

@@ -1,14 +1,15 @@
 # Template file for 'sagemath'
 pkgname=sagemath
-version=10.7
-revision=4
+version=10.8
+revision=1
 _pypi_version=${version/.beta/b}
 _pypi_version=${_pypi_version/.rc/rc}
 build_style=python3-pep517
+make_build_args="-C setup-args=-Dbuild-docs=false"
 hostmakedepends="pkg-config python3-Cython python3-Jinja2
  python3-pkgconfig python3-setuptools python3-wheel
  python3-gmpy2 python3-memory_allocator python3-numpy ecl
- python3-cypari2 python3-cysignals python3-devel"
+ python3-cypari2 python3-cysignals python3-devel python3-meson-python"
 makedepends="boost-headers brial-devel cliquer-devel ecl eclib-devel
  ecm-devel fflas-ffpack flintlib-devel gap-devel gd-devel glpk-devel
  gsl-devel iml-devel lcalc-devel libbraiding-devel libhomfly-devel libmpc-devel
@@ -17,7 +18,7 @@ makedepends="boost-headers brial-devel cliquer-devel ecl eclib-devel
  python3-cysignals python3-devel python3-gmpy2 python3-memory_allocator
  python3-numpy rankwidth-devel singular symmetrica-devel"
 depends="eclib-devel fflas-ffpack flintlib-devel gcc-fortran meson gd-devel
- gfan gsl-devel gzip libpng-devel linbox-devel m4ri-devel maxima-ecl
+ gfan gsl-devel gzip libpng-devel linbox-devel m4ri-devel maxima-ecl maxima-src
  mpfr-devel nauty ntl-devel palp pari-devel pari-elldata-small pari-galdata
  pari-galpol-small pari-seadata-small pkg-config python3-Cython python3-cypari2
  python3-cysignals python3-devel python3-fpylll python3-ipython python3-lrcalc
@@ -28,22 +29,20 @@ depends="eclib-devel fflas-ffpack flintlib-devel gcc-fortran meson gd-devel
  python3-conway-polynomials sage-data-elliptic_curves sage-data-graphs
  sage-data-polytopes_db sympow tachyon threejs-sage
  python3-six python3-gmpy2 python3-numpy python3-pexpect python3-Sphinx
- python3-Pillow python3-mpmath python3-jupyter_client python3-ptyprocess"
-checkdepends="$depends python3-pytest pythran python3-Sphinx gdb"
+ python3-Pillow python3-mpmath python3-jupyter_client python3-ptyprocess
+ python3-platformdirs"
+checkdepends="${depends} python3-pytest pythran python3-Sphinx gdb"
 short_desc="Open source mathematics software"
 maintainer="Gonzalo Tornaría <[email protected]>"
 license="GPL-2.0-or-later"
 homepage="https://www.sagemath.org/"
 changelog="https://github.com/sagemath/sage/releases"
-distfiles="${PYPI_SITE}/s/sagemath-standard/sagemath_standard-${_pypi_version}.tar.gz"
-checksum=f6ec41913a745b94e20ceae69c2c54a7c8e549b3dc8b4a01dbd874c772924149
+distfiles="${PYPI_SITE}/s/sagemath/sagemath-${_pypi_version}.tar.gz"
+checksum=864c21a84bfad05f586ccdc45bf685552cd87a236bf56bc30163de474569f82c
 nocross="due to ntl (eclib, singular), fflas-ffpack, givaro, linbox, sympow, maxima"
 
-# main repo `.../src/sage/`  is `.../sage/` here
-patch_args=-Np2
-
 # parallel build
-export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
+export SAGE_NUM_THREADS="${XBPS_MAKEJOBS}"
 
 post_install() {
 	# move scripts to /usr/libexec
@@ -74,16 +73,16 @@ do_check() {
 	fi
 	cp ${FILESDIR}/timings2.json .
 	_test_args="--stats_path=timings2.json"
-	if [ "$XBPS_CHECK_PKGS" = full ]; then
+	if [ "${XBPS_CHECK_PKGS}" = full ]; then
 		_test_args+=" --long --warn-long 30.0"
 	else
 		_test_args+=" --warn-long 10.0"
 	fi
-	if [ "$XBPS_BUILD_ENVIRONMENT" = "void-packages-ci" ]; then
+	if [ "${XBPS_BUILD_ENVIRONMENT}" = "void-packages-ci" ]; then
 		# for CI use a predictable random seed
 		_test_args+=" --random-seed=0"
 	fi
 
 	PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
-		sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
+		python3 -m sage.doctest -p ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
 }