sagemath: update to 10.8.

Author: dkwo

srcpkgs/sagemath/patches/40594-Fix_segfault_in_libgap.patch

@@ -1,49 +1,64 @@
 # Template file for 'sagemath'
 pkgname=sagemath
-version=10.7
-revision=4
+version=10.8
+revision=1
 _pypi_version=${version/.beta/b}
 _pypi_version=${_pypi_version/.rc/rc}
 build_style=python3-pep517
-hostmakedepends="pkg-config python3-Cython python3-Jinja2
- python3-pkgconfig python3-setuptools python3-wheel
- python3-gmpy2 python3-memory_allocator python3-numpy ecl
- python3-cypari2 python3-cysignals python3-devel"
+make_build_args="-C setup-args=-Dbuild-docs=false"
+hostmakedepends="pkg-config
+ python3-Jinja2 python3-pkgconfig python3-setuptools
+ python3-wheel python3-meson-python"
 makedepends="boost-headers brial-devel cliquer-devel ecl eclib-devel
  ecm-devel fflas-ffpack flintlib-devel gap-devel gd-devel glpk-devel
  gsl-devel iml-devel lcalc-devel libbraiding-devel libhomfly-devel libmpc-devel
  libpng-devel linbox-devel m4ri-devel m4rie-devel mpfi-devel
- mpfr-devel ntl-devel openblas-devel pari-devel planarity-devel python3-cypari2
- python3-cysignals python3-devel python3-gmpy2 python3-memory_allocator
- python3-numpy rankwidth-devel singular symmetrica-devel"
-depends="eclib-devel fflas-ffpack flintlib-devel gcc-fortran meson gd-devel
- gfan gsl-devel gzip libpng-devel linbox-devel m4ri-devel maxima-ecl
- mpfr-devel nauty ntl-devel palp pari-devel pari-elldata-small pari-galdata
- pari-galpol-small pari-seadata-small pkg-config python3-Cython python3-cypari2
- python3-cysignals python3-devel python3-fpylll python3-ipython python3-lrcalc
+ mpfr-devel ntl-devel openblas-devel pari-devel planarity-devel
+ singular symmetrica-devel rankwidth-devel
+ maxima-ecl nauty gfan
+ gcc-fortran palp pari-elldata-small pari-galdata
+ pari-galpol-small pari-seadata-small
+ sage-data-combinatorial_designs
+ sage-data-combinatorial_designs
+ sage-data-elliptic_curves
+ sage-data-graphs
+ sage-data-polytopes_db
+ sympow tachyon threejs-sage
+ python3-cypari2 python3-cysignals python3-devel python3-gmpy2
+ python3-memory_allocator python3-numpy python3-Cython
+ python3-fpylll python3-ipython python3-lrcalc
  python3-ipython_ipykernel python3-jupyter_ipywidgets python3-matplotlib
- python3-memory_allocator python3-networkx python3-pip python3-pkgconfig
+ python3-networkx python3-pip
  python3-pplpy python3-primecountpy python3-requests python3-scipy
- python3-sympy python3-traitlets sage-data-combinatorial_designs
- python3-conway-polynomials sage-data-elliptic_curves sage-data-graphs
- sage-data-polytopes_db sympow tachyon threejs-sage
- python3-six python3-gmpy2 python3-numpy python3-pexpect python3-Sphinx
- python3-Pillow python3-mpmath python3-jupyter_client python3-ptyprocess"
-checkdepends="$depends python3-pytest pythran python3-Sphinx gdb"
+ python3-sympy python3-traitlets
+ python3-conway-polynomials
+ python3-six python3-pexpect python3-Sphinx
+ python3-Pillow python3-mpmath python3-jupyter_client python3-ptyprocess
+ python3-platformdirs python3-pytest"
+depends="gzip
+ python3-Cython python3-Pillow python3-Sphinx python3-conway-polynomials
+ python3-cypari2 python3-cysignals python3-fpylll python3-gmpy2
+ python3-ipython python3-ipython_ipykernel python3-jupyter_client
+ python3-jupyter_ipywidgets python3-matplotlib python3-memory_allocator
+ python3-mpmath python3-networkx python3-numpy python3-pexpect
+ python3-pkgconfig python3-platformdirs python3-pplpy python3-primecountpy
+ python3-ptyprocess python3-requests python3-scipy python3-six
+ python3-sympy python3-traitlets"
+checkdepends="${depends} python3-pytest pythran python3-Sphinx gdb"
 short_desc="Open source mathematics software"
 maintainer="Gonzalo Tornaría <[email protected]>"
 license="GPL-2.0-or-later"
 homepage="https://www.sagemath.org/"
 changelog="https://github.com/sagemath/sage/releases"
-distfiles="${PYPI_SITE}/s/sagemath-standard/sagemath_standard-${_pypi_version}.tar.gz"
-checksum=f6ec41913a745b94e20ceae69c2c54a7c8e549b3dc8b4a01dbd874c772924149
+distfiles="${PYPI_SITE}/s/sagemath/sagemath-${_pypi_version}.tar.gz"
+checksum=864c21a84bfad05f586ccdc45bf685552cd87a236bf56bc30163de474569f82c
 nocross="due to ntl (eclib, singular), fflas-ffpack, givaro, linbox, sympow, maxima"
 
 # main repo `.../src/sage/`  is `.../sage/` here
 patch_args=-Np2
 
 # parallel build
-export SAGE_NUM_THREADS="$XBPS_MAKEJOBS"
+export SAGE_NUM_THREADS="${XBPS_MAKEJOBS}"
 
 post_install() {
 	# move scripts to /usr/libexec
@@ -57,33 +72,3 @@ post_install() {
 	vmkdir usr/bin
 	ln -s /usr/libexec/sagemath/sage ${DESTDIR}/usr/bin
 }
-
-do_check() {
-	local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
-	python3 -m installer -d "${testdir}" dist/*.whl
-
-	# this makes for nicer (shorter) relative paths in output
-	cd ${testdir}/${py3_sitelib}
-
-	if [ -f ${XBPS_DISTDIR}/sagemath-check ] ; then
-		_sed='s|#.*||;/^\s*$/d;s|^\s*\([^ ]*/\)\?sage/|sage/|g' \
-		_test_files=$(sed -e "$_sed" ${XBPS_DISTDIR}/sagemath-check)
-	fi
-	if [ -z "$_test_files" ]; then
-		_test_files=--all
-	fi
-	cp ${FILESDIR}/timings2.json .
-	_test_args="--stats_path=timings2.json"
-	if [ "$XBPS_CHECK_PKGS" = full ]; then
-		_test_args+=" --long --warn-long 30.0"
-	else
-		_test_args+=" --warn-long 10.0"
-	fi
-	if [ "$XBPS_BUILD_ENVIRONMENT" = "void-packages-ci" ]; then
-		# for CI use a predictable random seed
-		_test_args+=" --random-seed=0"
-	fi
-
-	PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
-		sage -tp ${XBPS_MAKEJOBS} ${_test_args} ${_test_files}
-}