Update conda channels and dependencies in env.yml

mrvollger · web-flow · commit 951d6017b5f9 · 2025-12-05T10:19:12.000-08:00
Removed 'defaults' channel and added new dependencies.
diff --git a/workflow/envs/env.yml b/workflow/envs/env.yml
@@ -1,9 +1,9 @@
 channels:
-  - bioconda
   - conda-forge
-  - defaults
+  - bioconda
 dependencies:
-  - snakemake
-  - snakefmt
-  - black
-  - snakedeploy
+  - bedtools
+  - samtools ==1.21
+  - minimap2
+  - rustybam ==0.1.34
+  - htslib ==1.21
