chore: drop fork submodules from vortex (#3666)

- Drops DuckDB related forks from the Vortex repo.
- Removes the following submodules:
```
[submodule "extension-ci-tools"]
	path = duckdb-vortex/extension-ci-tools
	url = https://github.com/duckdb/extension-ci-tools
[submodule "duckdb-vortex/duckdb-rs"]
	path = duckdb-vortex/duckdb-rs
	url = https://github.com/spiraldb/duckdb-rs
[submodule "duckdb-vortex/vcpkg"]
	path = duckdb-vortex/vcpkg
	url = https://github.com/microsoft/vcpkg.git
```	
- Moves the DuckDB repo from duckdb-vortex to vortex-duckdb/duckdb
(switches to the original repo as part of that).
- Bumps duckdb dep in vortex-duckdb to v1.3.1
- Updates ruff exclude paths to: `extend-exclude = [".venv",
"vortex-duckdb/duckdb/**"]`

---------

Signed-off-by: Alexander Droste <[email protected]>

Author: 0ax1

.gitmodules

@@ -1,12 +1,3 @@
-[submodule "duckdb"]
-	path = duckdb-vortex/duckdb
-	url = https://github.com/spiraldb/duckdb
-[submodule "extension-ci-tools"]
-	path = duckdb-vortex/extension-ci-tools
-	url = https://github.com/duckdb/extension-ci-tools
-[submodule "duckdb-vortex/duckdb-rs"]
-	path = duckdb-vortex/duckdb-rs
-	url = https://github.com/spiraldb/duckdb-rs
-[submodule "duckdb-vortex/vcpkg"]
-	path = duckdb-vortex/vcpkg
-	url = https://github.com/microsoft/vcpkg.git
+[submodule "vortex-duckdb/duckdb"]
+	path = vortex-duckdb/duckdb
+	url = [email protected]:duckdb/duckdb.git

bench-vortex/build.rs

@@ -19,7 +19,7 @@ use std::path::PathBuf;
 /// static lib is not self-contained. This means that it includes symbols which
 /// are not defined as part of the static library.
 fn main() {
-    const DUCKDB_VERSION: &str = "v1.3.0";
+    const DUCKDB_VERSION: &str = "v1.3.1";
     let manifest_dir = PathBuf::from(env::var("CARGO_MANIFEST_DIR").unwrap());
     let target_dir = manifest_dir.parent().unwrap().join("target");
     let lib_path = target_dir.join(format!("duckdb-{DUCKDB_VERSION}"));

bench-vortex/src/bin/tpch.rs

@@ -463,7 +463,7 @@ async fn bench_main(
 
 fn verify_duckdb_tpch_results(scale_factor: u8, duckdb_path: PathBuf) -> anyhow::Result<()> {
     let query_dir = Path::new(env!("CARGO_MANIFEST_DIR"))
-        .join("../duckdb-vortex/duckdb/extension/tpch/dbgen/queries");
+        .join("../vortex-duckdb/duckdb/extension/tpch/dbgen/queries");
 
     let tmp_dir = format!(
         "{}/spiral-tpch",