Fix whitespace in basepath and workflow_name and outdir location issue when using run_cwl_workflow (#334) * workflow name issue derived from filepath needs flattening solving the weird file not found error * resolve basepath, workflowname whitespace issues and correctly place outdir * remove workflow_name from outdir_toil when using run_cwl_workflow to avoid long names --------- Co-authored-by: Vasu Jaganath <[email protected]> - misterbrandonwalker/workflow-inference-compiler - master #371
Annotations
34 errors
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lint_and_test (ubuntu-latest)
Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/workflow-inference-compiler/workflow-inference-compiler/sophios/.github/my_actions/reply_sender'. Did you forget to run actions/checkout before running your local action?
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lint_and_test (ubuntu-latest)
Process completed with exit code 127.
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Process completed with exit code 127.
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The process '/usr/bin/git' failed with exit code 128
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repository 'https://github.com/misterbrandonwalker/sophios/' not found
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repository 'https://github.com/misterbrandonwalker/sophios/' not found
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repository 'https://github.com/misterbrandonwalker/sophios/' not found
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lint_and_test (windows-latest)
Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under 'D:\a\workflow-inference-compiler\workflow-inference-compiler\sophios\.github\my_actions\reply_sender'. Did you forget to run actions/checkout before running your local action?
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lint_and_test (windows-latest)
Process completed with exit code 127.
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Process completed with exit code 127.
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Process completed with exit code 127.
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Process completed with exit code 127.
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Process completed with exit code 127.
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Process completed with exit code 2.
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Process completed with exit code 1.
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Process completed with exit code 127.
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lint_and_test (windows-latest)
The process 'C:\Program Files\Git\bin\git.exe' failed with exit code 128
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lint_and_test (windows-latest)
repository 'https://github.com/misterbrandonwalker/sophios/' not found
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lint_and_test (windows-latest)
repository 'https://github.com/misterbrandonwalker/sophios/' not found
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lint_and_test (windows-latest)
repository 'https://github.com/misterbrandonwalker/sophios/' not found
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