correct the deletion of autogenerated (PolusAI#335)

vjaganat90 · Vasu Jaganath · web-flow · commit 09b1f46672eb · 2025-04-21T17:24:17.000-04:00
Co-authored-by: Vasu Jaganath &lt;vasu.jaganath@axleinfo.com&gt;
diff --git a/src/sophios/api/pythonapi.py b/src/sophios/api/pythonapi.py
@@ -802,7 +802,7 @@ def get_cwl_workflow(self, args_dict: Dict[str, str] = {}) -> Json:
             **cwl_ast
         }
         # delete the skeletal and ephemeral autogenerated folder
-        _ = sub.run(['rm', '-rf', 'autogenerated'], shell=True, check=False, executable="/bin/bash")
+        _ = sub.run(['rm -rf autogenerated'], shell=True, check=False, executable="/bin/bash")
         return workflow_json
 
     def run(self, compile_args_dict: Dict[str, str] = {}, run_args_dict: Dict[str, str] = {}) -> None:

Original file line number	Diff line number	Diff line change
`@@ -802,7 +802,7 @@ def get_cwl_workflow(self, args_dict: Dict[str, str] = {}) -> Json:`
`802`	`802`	`**cwl_ast`
`803`	`803`	`}`
`804`	`804`	`# delete the skeletal and ephemeral autogenerated folder`
`805`		`- _ = sub.run(['rm', '-rf', 'autogenerated'], shell=True, check=False, executable="/bin/bash")`
	`805`	`+ _ = sub.run(['rm -rf autogenerated'], shell=True, check=False, executable="/bin/bash")`
`806`	`806`	`return workflow_json`
`807`	`807`
`808`	`808`	`def run(self, compile_args_dict: Dict[str, str] = {}, run_args_dict: Dict[str, str] = {}) -> None:`