hot fix for path issue (PolusAI#333)

Co-authored-by: Vasu Jaganath <[email protected]>

Author: vjaganat90

docs/dev/installguide.md

@@ -6,7 +6,7 @@ You will first need to install the [git](https://git-scm.com) version control sy
 
 ```
 git clone https://github.com/PolusAI/sophios.git
-cd workflow-inference-compiler
+cd sophios
 
 cd install/
 ./install_conda.sh

src/sophios/run_local.py

@@ -472,15 +472,15 @@ async def run_cwl_serialized_async(workflow: Json, basepath: str,
     pc.create_output_dirs(output_dirs, basepath)
     compiled_cwl = workflow_name + '.cwl'
     inputs_yml = workflow_name + '_inputs.yml'
+    basepath = basepath.rstrip("/") if basepath != "/" else basepath
     # write _input.yml file
-    with open(basepath / inputs_yml, 'w', encoding='utf-8') as f:
+    with open(Path(basepath) / inputs_yml, 'w', encoding='utf-8') as f:
         yaml.dump(workflow['yaml_inputs'], f)
     workflow.pop('retval', None)
     workflow.pop('yaml_inputs', None)
     workflow.pop('name', None)
-    basepath = basepath.rstrip("/") if basepath != "/" else basepath
     # write compiled .cwl file
-    with open(basepath / compiled_cwl, 'w', encoding='utf-8') as f:
+    with open(Path(basepath) / compiled_cwl, 'w', encoding='utf-8') as f:
         yaml.dump(workflow, f)
     retval = run_cwl_workflow(workflow_name, basepath,
                               cwl_runner, container_cmd, False, env_commands=env_commands)