fix(cli): make wmill init generated skills respect nonDottedPaths config

[rubenfiszel]

Summary

• Skills generated by wmill init now adapt to the nonDottedPaths setting in wmill.yaml
• Uses placeholders in skill templates ({{FLOW_SUFFIX}}, {{RAW_APP_SUFFIX}}, {{INLINE_SCRIPT_NAMING}}) resolved at init time
• When nonDottedPaths: true (default for new inits): skills reference __flow, __raw_app, and document non-dotted inline script naming (a.ts)
• When nonDottedPaths: false (legacy): skills reference .flow, .raw_app, and document dotted inline script naming (a.inline_script.ts)

Verified

• wmill init on fresh project → nonDottedPaths: true → skills use __flow, no .inline_script.
• wmill init with existing wmill.yaml (nonDottedPaths: false) → skills use .flow, .inline_script.
• No unreplaced {{...}} placeholders in either case

Test plan

• wmill init --use-default on fresh directory → skills use __flow convention
• wmill init --use-default with pre-existing wmill.yaml (nonDottedPaths: false) → skills use .flow convention
• No leftover placeholders in generated skills

🤖 Generated with Claude Code

[claude]

Claude finished @rubenfiszel's task in 1m 3s —— View job

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Review of PR #8377

• Gather context and read the diff
• Verify documentation accuracy against codebase
• Post review feedback

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LGTM — This is a clean, well-structured documentation addition. I verified all references against the codebase:

• getNonDottedPaths(), setNonDottedPaths(), getFolderSuffix() all exist in cli/src/utils/resource_folders.ts
• newPathAssigner() with skipInlineScriptSuffix option exists in cli/windmill-utils-internal/src/path-utils/path-assigner.ts
• The nonDottedPaths key in wmill.yaml is correctly referenced (parsed at resource_folders.ts:83)
• The table of dotted vs non-dotted naming is consistent with the DOTTED_SUFFIXES / NON_DOTTED_SUFFIXES constants in the code
• The mention of extractInlineScripts*() is accurate — those functions are used in sync.ts, flow_metadata.ts, and app_metadata.ts

No issues found. The documentation accurately captures the convention and will help prevent regressions like the one fixed in #8375.

Reproduce / Verify

This PR only modifies CLAUDE.md. To verify, open the file in the repository (or view it rendered on the PR's "Files changed" tab) and confirm the new "CLI: nonDottedPaths Convention" section renders correctly — the table, code block, and key file references should all display properly.

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