Add admonition component and update pubs

Author: wiseodd

.astro/content-modules.mjs

@@ -1,24 +1,24 @@
 
 export default new Map([
-["src/content/post/autoencoders.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fautoencoders.mdx&astroContentModuleFlag=true")],
+["src/content/post/annealed-importance-sampling.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fannealed-importance-sampling.mdx&astroContentModuleFlag=true")],
 ["src/content/post/batchnorm.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fbatchnorm.mdx&astroContentModuleFlag=true")],
+["src/content/post/autoencoders.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fautoencoders.mdx&astroContentModuleFlag=true")],
+["src/content/post/brouwers-fixed-point.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fbrouwers-fixed-point.mdx&astroContentModuleFlag=true")],
 ["src/content/post/boundary-seeking-gan.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fboundary-seeking-gan.mdx&astroContentModuleFlag=true")],
 ["src/content/post/bayesian-regression.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fbayesian-regression.mdx&astroContentModuleFlag=true")],
-["src/content/post/annealed-importance-sampling.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fannealed-importance-sampling.mdx&astroContentModuleFlag=true")],
-["src/content/post/brouwers-fixed-point.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fbrouwers-fixed-point.mdx&astroContentModuleFlag=true")],
-["src/content/post/contractive-autoencoder.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fcontractive-autoencoder.mdx&astroContentModuleFlag=true")],
 ["src/content/post/chentsov-theorem.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fchentsov-theorem.mdx&astroContentModuleFlag=true")],
 ["src/content/post/conditional-gan-tensorflow.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconditional-gan-tensorflow.mdx&astroContentModuleFlag=true")],
 ["src/content/post/conditional-vae.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconditional-vae.mdx&astroContentModuleFlag=true")],
+["src/content/post/contractive-autoencoder.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fcontractive-autoencoder.mdx&astroContentModuleFlag=true")],
 ["src/content/post/conv-probit.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconv-probit.mdx&astroContentModuleFlag=true")],
-["src/content/post/convnet-maxpool-layer.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconvnet-maxpool-layer.mdx&astroContentModuleFlag=true")],
-["src/content/post/convnet-conv-layer.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconvnet-conv-layer.mdx&astroContentModuleFlag=true")],
 ["src/content/post/coupled-gan.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fcoupled-gan.mdx&astroContentModuleFlag=true")],
+["src/content/post/convnet-conv-layer.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconvnet-conv-layer.mdx&astroContentModuleFlag=true")],
+["src/content/post/convnet-maxpool-layer.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fconvnet-maxpool-layer.mdx&astroContentModuleFlag=true")],
 ["src/content/post/deploying-wagtail.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fdeploying-wagtail.mdx&astroContentModuleFlag=true")],
 ["src/content/post/developing-wagtail.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fdeveloping-wagtail.mdx&astroContentModuleFlag=true")],
+["src/content/post/fisher-information.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Ffisher-information.mdx&astroContentModuleFlag=true")],
 ["src/content/post/dropout.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fdropout.mdx&astroContentModuleFlag=true")],
 ["src/content/post/forward-reverse-kl.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fforward-reverse-kl.mdx&astroContentModuleFlag=true")],
-["src/content/post/fisher-information.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Ffisher-information.mdx&astroContentModuleFlag=true")],
 ["src/content/post/gan-pytorch.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fgan-pytorch.mdx&astroContentModuleFlag=true")],
 ["src/content/post/gan-tensorflow.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fgan-tensorflow.mdx&astroContentModuleFlag=true")],
 ["src/content/post/gaussian-anomaly-detection.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fgaussian-anomaly-detection.mdx&astroContentModuleFlag=true")],
@@ -30,25 +30,25 @@ export default new Map([
 ["src/content/post/infogan.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Finfogan.mdx&astroContentModuleFlag=true")],
 ["src/content/post/jekyll-fb-share.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fjekyll-fb-share.mdx&astroContentModuleFlag=true")],
 ["src/content/post/kl-mle.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fkl-mle.mdx&astroContentModuleFlag=true")],
-["src/content/post/laplace.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flaplace.mdx&astroContentModuleFlag=true")],
 ["src/content/post/least-squares-gan.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fleast-squares-gan.mdx&astroContentModuleFlag=true")],
-["src/content/post/levelset-method.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flevelset-method.mdx&astroContentModuleFlag=true")],
-["src/content/post/levelset-segmentation.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flevelset-segmentation.mdx&astroContentModuleFlag=true")],
+["src/content/post/lda-gibbs.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flda-gibbs.mdx&astroContentModuleFlag=true")],
+["src/content/post/laplace.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flaplace.mdx&astroContentModuleFlag=true")],
 ["src/content/post/lstm-backprop.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flstm-backprop.mdx&astroContentModuleFlag=true")],
+["src/content/post/levelset-method.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flevelset-method.mdx&astroContentModuleFlag=true")],
 ["src/content/post/manifold-gaussians.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fmanifold-gaussians.mdx&astroContentModuleFlag=true")],
+["src/content/post/levelset-segmentation.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flevelset-segmentation.mdx&astroContentModuleFlag=true")],
+["src/content/post/mayer-vietoris-sphere.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fmayer-vietoris-sphere.mdx&astroContentModuleFlag=true")],
 ["src/content/post/metropolis-hastings.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fmetropolis-hastings.mdx&astroContentModuleFlag=true")],
-["src/content/post/lda-gibbs.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Flda-gibbs.mdx&astroContentModuleFlag=true")],
 ["src/content/post/minkowski-dirichlet.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fminkowski-dirichlet.mdx&astroContentModuleFlag=true")],
-["src/content/post/mayer-vietoris-sphere.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fmayer-vietoris-sphere.mdx&astroContentModuleFlag=true")],
 ["src/content/post/mle-vs-map.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fmle-vs-map.mdx&astroContentModuleFlag=true")],
-["src/content/post/natural-gradient.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fnatural-gradient.mdx&astroContentModuleFlag=true")],
 ["src/content/post/nn-optimization.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fnn-optimization.mdx&astroContentModuleFlag=true")],
-["src/content/post/optimization-riemannian-manifolds.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Foptimization-riemannian-manifolds.mdx&astroContentModuleFlag=true")],
 ["src/content/post/nn-sgd.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fnn-sgd.mdx&astroContentModuleFlag=true")],
 ["src/content/post/parallel-monte-carlo.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fparallel-monte-carlo.mdx&astroContentModuleFlag=true")],
 ["src/content/post/plotting.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fplotting.mdx&astroContentModuleFlag=true")],
+["src/content/post/optimization-riemannian-manifolds.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Foptimization-riemannian-manifolds.mdx&astroContentModuleFlag=true")],
 ["src/content/post/rejection-sampling.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Frejection-sampling.mdx&astroContentModuleFlag=true")],
 ["src/content/post/residual-net.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fresidual-net.mdx&astroContentModuleFlag=true")],
+["src/content/post/natural-gradient.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fnatural-gradient.mdx&astroContentModuleFlag=true")],
 ["src/content/post/scrapy-long-running.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fscrapy-long-running.mdx&astroContentModuleFlag=true")],
 ["src/content/post/slice-sampling.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Fslice-sampling.mdx&astroContentModuleFlag=true")],
 ["src/content/post/theano-pde.mdx", () => import("astro:content-layer-deferred-module?astro%3Acontent-layer-deferred-module=&fileName=src%2Fcontent%2Fpost%2Ftheano-pde.mdx&astroContentModuleFlag=true")],

.astro/data-store.json

@@ -433,7 +433,7 @@
       "Vincent Fortuin",
       "Agustinus Kristiadi"
     ],
-    "venue": "AI for Accelerated Materials Design–ICLR 2025",
+    "venue": "AI for Accelerated Materials Design–ICLR",
     "year": 2025,
     "paper": "https://openreview.net/forum?id=GbV2JjfnSY"
   },
@@ -505,5 +505,50 @@
     "venue": "ICML",
     "year": 2025,
     "paper": "https://arxiv.org/abs/2502.04517"
+  },
+
+  {
+    "type": "journal",
+    "title": "Generative AI for the Design of Molecules: Advances and Challenges",
+    "author": [
+      "Yan Sun",
+      "Lianghong Chen",
+      "Zihao Jing",
+      "Yan Yi Li",
+      "Dongkyu Kim",
+      "Jing-Yan Gao",
+      "Reza Noroozi",
+      "Grace Yi",
+      "Conrard Tetsassi Feugmo",
+      "Anna Klinkova",
+      "Kyla Sask",
+      "Agustinus Kristiadi",
+      "Boyu Wang",
+      "Elizabeth Gillies",
+      "Kun Ping Lu",
+      "HaoTian Harvey Shi",
+      "Pingzhao Hu"
+    ],
+    "venue": "Journal of Chemical Information and Modeling",
+    "year": 2025,
+    "paper": "https://pubs.acs.org/doi/abs/10.1021/acs.jcim.5c02234"
+  },
+
+  {
+    "type": "workshop",
+    "title": "Limits of PRM-Guided Tree Search for Mathematical Reasoning with LLMs",
+    "author": ["Tristan Cinquin", "Geoff Pleiss", "Agustinus Kristiadi"],
+    "venue": "MATH-AI-NeurIPS",
+    "year": 2025,
+    "paper": "https://arxiv.org/abs/2510.20272"
+  },
+
+  {
+    "type": "preprint",
+    "title": "Introduction to the Analysis of Probabilistic Decision-Making Algorithms",
+    "author": ["Agustinus Kristiadi"],
+    "venue": "ArXiv",
+    "year": 2025,
+    "paper": "https://arxiv.org/abs/2508.21620"
   }
 ]

src/assets/publications.json

@@ -0,0 +1,38 @@
+---
+import { cn } from "@/utils";
+const { type } = Astro.props;
+
+const iconPaths = {
+  warning:
+    "M12 9v2m0 4h.01m-6.938 4h13.856c1.54 0 2.502-1.667 1.732-3L13.732 4c-.77-1.333-2.694-1.333-3.464 0L3.34 16c-.77 1.333.192 3 1.732 3z",
+  error: "M10 14l2-2m0 0l2-2m-2 2l-2-2m2 2l2 2m7-2a9 9 0 11-18 0 9 9 0 0118 0z",
+  info: "M13 16h-1v-4h-1m1-4h.01M21 12a9 9 0 11-18 0 9 9 0 0118 0z",
+  success: "M9 12l2 2 4-4m6 2a9 9 0 11-18 0 9 9 0 0118 0z",
+};
+
+const borders = {
+  warning: "border-orange-100 dark:border-orange-950",
+  error: "border-red-100 dark:border-red-950",
+  info: "border-blue-100 dark:border-blue-950",
+  success: "border-green-100 dark:border-green-950",
+};
+
+const icon = iconPaths[type] || iconPaths.info;
+const border = borders[type] || borders.info;
+---
+
+<div class={`alert alert-soft alert-${type} ${border}`}>
+  <svg
+    xmlns='http://www.w3.org/2000/svg'
+    class='h-6 w-6 shrink-0 stroke-current brightness-75'
+    fill='none'
+    viewBox='0 0 24 24'
+  >
+    <path stroke-linecap='round' stroke-linejoin='round' stroke-width='2' d={icon}
+    ></path>
+  </svg>
+
+  <div class='brightness-75'>
+    <slot />
+  </div>
+</div>

src/components/Admonition.astro

@@ -5,33 +5,19 @@ publishDate: 2024-08-30 00:00
 ---
 
 import BlogImage from "@/components/BlogImage.astro";
+import Admonition from "@/components/Admonition.astro";
 
 One of your goals as a scholar is to be able to produce documents/papers with high-quality, polished styles.
 How so?
 By following the tips below, and by write, write, and write.
 
 ## General writing protips
 
-<div role='alert' class='alert alert-error alert-soft'>
-  <svg
-    xmlns='http://www.w3.org/2000/svg'
-    class='h-6 w-6 shrink-0 stroke-current'
-    fill='none'
-    viewBox='0 0 24 24'
-  >
-    <path
-      stroke-linecap='round'
-      stroke-linejoin='round'
-      stroke-width='2'
-      d='M12 9v2m0 4h.01m-6.938 4h13.856c1.54 0 2.502-1.667 1.732-3L13.732 4c-.77-1.333-2.694-1.333-3.464 0L3.34 16c-.77 1.333.192 3 1.732 3z'
-    ></path>
-  </svg>
-  <span>
-    **DO NOT** use LLMs when writing. It should only be used to proofread, i.e.,
-    **after** you're done. Using an LLM when to improve your writing skill is akin to
-    going to the gym and letting your personal trainer lift the weights for you.
-  </span>
-</div>
+<Admonition type='error'>
+  **DO NOT** use LLMs when writing. It should only be used to proofread, i.e., **after**
+  you're done. Using an LLM when to improve your writing skill is akin to going to the
+  gym and letting your personal trainer lift the weights for you.
+</Admonition>
 
 - **DO:** Write before you even do any experiment.
   - Your initial draft = hypothesis
@@ -56,26 +42,11 @@ By following the tips below, and by write, write, and write.
 
 ## LaTeX protips
 
-<div role='alert' class='alert alert-info alert-soft'>
-  <svg
-    xmlns='http://www.w3.org/2000/svg'
-    fill='none'
-    viewBox='0 0 24 24'
-    class='h-6 w-6 shrink-0 stroke-current'
-  >
-    <path
-      stroke-linecap='round'
-      stroke-linejoin='round'
-      stroke-width='2'
-      d='M13 16h-1v-4h-1m1-4h.01M21 12a9 9 0 11-18 0 9 9 0 0118 0z'
-    ></path>
-  </svg>
-  <span>
-    You can use the following editors: (1.) Local LaTeX with git for collab: Check LaTeX
-    workshop if you use VSCode, or VimTex if you use Neovim. (2.) Crixet:
-    [https://crixet.com](https://crixet.com/). (3.) Overleaf.
-  </span>
-</div>
+<Admonition type='info'>
+  You can use the following editors: (1.) Local LaTeX with git for collab: Check LaTeX
+  workshop if you use VSCode, or VimTex if you use Neovim. (2.) Crixet:
+  [https://crixet.com](https://crixet.com/). (3.) Overleaf.
+</Admonition>
 
 ### General
 

src/content/post/writing-advice.mdx

@@ -3,6 +3,7 @@ import PageLayout from "../layouts/BaseLayout.astro";
 import Button from "../components/Button.astro";
 import Section from "../components/Section.astro";
 import Label from "../components/Label.astro";
+import Admonition from "../components/Admonition.astro";
 import News from "../components/News.astro";
 import news from "../assets/news.json";
 import type { NewsPost } from "@/utils";
@@ -247,25 +248,10 @@ const sortedNews = news
 
     <hr />
     <Section title='Openings'>
-      <div role='alert' class='alert alert-warning alert-soft !text-yellow-600'>
-        <svg
-          xmlns='http://www.w3.org/2000/svg'
-          class='h-6 w-6 shrink-0 stroke-current'
-          fill='none'
-          viewBox='0 0 24 24'
-        >
-          <path
-            stroke-linecap='round'
-            stroke-linejoin='round'
-            stroke-width='2'
-            d='M12 9v2m0 4h.01m-6.938 4h13.856c1.54 0 2.502-1.667 1.732-3L13.732 4c-.77-1.333-2.694-1.333-3.464 0L3.34 16c-.77 1.333.192 3 1.732 3z'
-          ></path>
-        </svg>
-        <span
-          >Unfortunately, it wouldn't be possible for me to reply to all applications.
-          Only shortlisted applicants will be contacted. I apologize in advance.</span
-        >
-      </div>
+      <Admonition type='warning'>
+        Unfortunately, it wouldn't be possible for me to reply to all applications. Only
+        shortlisted applicants will be contacted. I apologize in advance.
+      </Admonition>
 
       <ul class='flex flex-col gap-y-5 sm:gap-y-4'>
         <li>