Merge pull request #125 from kjsanger/feature/singularity-silent

Set Singularity logging to ERROR level

Author: kjsanger

singularity/scripts/singularity-exec-docker

@@ -7,4 +7,4 @@ DOCKER_USER=${DOCKER_USER:?required, but not set}
 DOCKER_IMAGE=${DOCKER_IMAGE:?required, but was not set}
 DOCKER_TAG=${DOCKER_TAG:?required, but not set}
 
-singularity exec "docker://$DOCKER_REGISTRY/$DOCKER_USER/$DOCKER_IMAGE:$DOCKER_TAG" "$@"
+singularity --silent exec "docker://$DOCKER_REGISTRY/$DOCKER_USER/$DOCKER_IMAGE:$DOCKER_TAG" "$@"

singularity/scripts/singularity-run-docker

@@ -7,4 +7,4 @@ DOCKER_USER=${DOCKER_USER:?required, but not set}
 DOCKER_IMAGE=${DOCKER_IMAGE:?required, but was not set}
 DOCKER_TAG=${DOCKER_TAG:?required, but not set}
 
-singularity run "docker://$DOCKER_REGISTRY/$DOCKER_USER/$DOCKER_IMAGE:$DOCKER_TAG" "$@"
+singularity --silent run "docker://$DOCKER_REGISTRY/$DOCKER_USER/$DOCKER_IMAGE:$DOCKER_TAG" "$@"

singularity/scripts/singularity-service-docker

@@ -44,12 +44,12 @@ flock --exclusive --timeout $LOCK_TIMEOUT $FD || {
     exit 1
 }
 
-if ! singularity instance list 2> >(logger -s -p user.err -t singularity-service-docker) |\
+if ! singularity --silent instance list 2> >(logger -s -p user.err -t singularity-service-docker) |\
         grep "$instance" 2>&1 >/dev/null
 then
     singularity --silent instance start "$DOCKER_URL" "$instance" 2> >(logger -s -p user.err -t singularity-service-docker) >/dev/null
 fi
 
 clean_up
 
-singularity exec "instance://$instance" "$@"
+singularity --silent exec "instance://$instance" "$@"