Integrate variables into DataTree (#41)

* sketching out changes needed to integrate variables into DataTree

* fixed some other basic conflicts

* fix mypy errors

* can create basic datatree node objects again

* child-variable name collisions dectected correctly

* in-progres

* add _replace method

* updated tests to assert identical instead of check .ds is expected_ds

* refactor .ds setter to use _replace

* refactor init to use _replace

* refactor test tree to avoid init

* attempt at copy methods

* rewrote implementation of .copy method

* xfailing test for deepcopying

* pseudocode implementation of DatasetView

* Revert "pseudocode implementation of DatasetView"

This reverts commit 52ef23b.

* removed duplicated implementation of copy

* reorganise API docs

* expose data_vars, coords etc. properties

* try except with calculate_dimensions private import

* add keys/values/items methods

* don't use has_data when .variables would do

* explanation of basic properties

* add data structures page to index

* revert adding documentation in favour of that going in a different PR

* correct deepcopy tests

* use .data_vars in copy tests

* make imports depend on most recent version of xarray

Co-authored-by: Mattia Almansi <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* remove try except for internal import

* depend on latest pre-release of xarray

* correct name of version

* xarray pre-release under pip in ci envs

* correct methods

* whatsnews

* improve docstrings

Co-authored-by: Mattia Almansi <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: 3 people

ci/doc.yml

@@ -4,7 +4,6 @@ channels:
 dependencies:
   - pip
   - python>=3.8
-  - xarray>=0.20.2
   - netcdf4
   - scipy
   - sphinx
@@ -16,3 +15,4 @@ dependencies:
   - zarr
   - pip:
       - git+https://github.com/xarray-contrib/datatree
+      - xarray>=2022.05.0.dev0

ci/environment.yml

@@ -4,7 +4,6 @@ channels:
   - nodefaults
 dependencies:
   - python>=3.8
-  - xarray>=0.20.2
   - netcdf4
   - pytest
   - flake8
@@ -13,3 +12,5 @@ dependencies:
   - pytest-cov
   - h5netcdf
   - zarr
+  - pip:
+      - xarray>=2022.05.0.dev0

datatree/__init__.py

@@ -6,7 +6,7 @@
 # import public API
 from .datatree import DataTree
 from .io import open_datatree
-from .mapping import map_over_subtree
+from .mapping import TreeIsomorphismError, map_over_subtree
 
 try:
     __version__ = get_distribution(__name__).version