|
| 1 | +{ |
| 2 | + "cells": [ |
| 3 | + { |
| 4 | + "cell_type": "markdown", |
| 5 | + "id": "8253fe2d", |
| 6 | + "metadata": {}, |
| 7 | + "source": [ |
| 8 | + "# Intro to Zarr\n", |
| 9 | + "\n", |
| 10 | + "This notebook provides a brief introduction to Zarr and how to\n", |
| 11 | + "use it in cloud environments for scalable, chunked, and compressed data storage.\n", |
| 12 | + "Zarr is a file format with implementations in different languages. In this tutorial, we will look at an example of how to use the Zarr format by looking at some features of the `zarr-python` library and how Zarr files can be opened with `xarray`.\n", |
| 13 | + "\n", |
| 14 | + "## What is Zarr?\n", |
| 15 | + "\n", |
| 16 | + "The Zarr data format is an open, community-maintained format designed for efficient, scalable storage of large N-dimensional arrays. It stores data as compressed and chunked arrays in a format well-suited to parallel processing and cloud-native workflows.\n", |
| 17 | + "\n", |
| 18 | + "### Zarr Data Organization:\n", |
| 19 | + "- **Arrays**: N-dimensional arrays that can be chunked and compressed.\n", |
| 20 | + "- **Groups**: A container for organizing multiple arrays and other groups with a hierarchical structure.\n", |
| 21 | + "- **Metadata**: JSON-like metadata describing the arrays and groups, including information about dimensions, data types, and compression.\n", |
| 22 | + "- **Dimensions and Shape**: Arrays can have any number of dimensions, and their shape is defined by the number of elements in each dimension.\n", |
| 23 | + "- **Coordinates & Indexing**: Zarr supports coordinate arrays for each dimension, allowing for efficient indexing and slicing.\n", |
| 24 | + "\n", |
| 25 | + "The diagram below showing the structure of a Zarr file:\n", |
| 26 | + "\n" |
| 27 | + ] |
| 28 | + }, |
| 29 | + { |
| 30 | + "cell_type": "code", |
| 31 | + "execution_count": null, |
| 32 | + "id": "ae9c38ed", |
| 33 | + "metadata": { |
| 34 | + "vscode": { |
| 35 | + "languageId": "plaintext" |
| 36 | + } |
| 37 | + }, |
| 38 | + "outputs": [], |
| 39 | + "source": [] |
| 40 | + }, |
| 41 | + { |
| 42 | + "cell_type": "code", |
| 43 | + "execution_count": null, |
| 44 | + "id": "233640b0", |
| 45 | + "metadata": { |
| 46 | + "vscode": { |
| 47 | + "languageId": "plaintext" |
| 48 | + } |
| 49 | + }, |
| 50 | + "outputs": [], |
| 51 | + "source": [ |
| 52 | + "The Xarray library provides a rich API for working with Zarr data, slicing, and selecting data. \n" |
| 53 | + ] |
| 54 | + } |
| 55 | + ], |
| 56 | + "metadata": { |
| 57 | + "language_info": { |
| 58 | + "name": "python" |
| 59 | + } |
| 60 | + }, |
| 61 | + "nbformat": 4, |
| 62 | + "nbformat_minor": 5 |
| 63 | +} |
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