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‎.binder/environment.yml

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‎.binder/environment.yml

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name: default
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channels:
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- conda-forge
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- nodefaults
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dependencies:
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- jupyter-book >=1.0.4.post1,<2
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- pre-commit >=4.2.0,<5
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- dask-labextension >=7.0.0,<8
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- jupyterlab >=4.4.4,<5
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- jupyter_bokeh >=4.0.5,<5
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- jupyterlab-myst >=2.4.2,<3
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- jupyter-resource-usage >=1.1.1,<2
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- cartopy >=0.24.0,<0.25
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- cf_xarray >=0.10.6,<0.11
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- dask >=2025.5.1,<2026
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- datashader >=0.18.1,<0.19
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- distributed >=2025.5.1,<2026
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- gcsfs >=2025.5.1,<2026
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- geoviews-core >=1.14.0,<2
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- gsw >=3.6.19,<4
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- hvplot >=0.11.3,<0.12
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- h5netcdf >=1.6.3,<2
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- ipykernel >=6.29.5,<7
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- matplotlib-base >=3.10.3,<4
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- netcdf4 >=1.7.2,<2
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- numpy >=2.2.6,<3
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- pint-xarray >=0.5.0,<0.6
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- pydap >=3.5.5,<4
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- python-graphviz >=0.21,<0.22
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- pooch >=1.8.2,<2
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- rioxarray >=0.19.0,<0.20
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- scipy >=1.16.0,<2
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- sphinx-codeautolink >=0.17.4,<0.18
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- sphinxcontrib-mermaid >=1.0.0,<2
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- sphinx-notfound-page >=1.1.0,<2
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- sphinxext-rediraffe >=0.2.7,<0.3
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- s3fs >=2025.5.1,<2026
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- xarray >=2025.7.0,<2026
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- zarr >=3.0.10,<4
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- flox >=0.10.4,<0.11
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- numbagg >=0.9.0,<0.10
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- rich >=14.0.0,<15
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- python >=3.10

‎.devcontainer/Dockerfile

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FROM pangeo/base-image:2025.01.24
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FROM mcr.microsoft.com/devcontainers/base:noble
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ARG PIXI_VERSION=v0.49.0
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RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix-dev/pixi/releases/download/${PIXI_VERSION}/pixi-$(uname -m)-unknown-linux-musl" \
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&& chmod +x /usr/local/bin/pixi \
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&& pixi info
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# set some user and workdir settings to work nicely with vscode
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USER vscode
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WORKDIR /home/vscode
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RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc

‎.devcontainer/devcontainer.json

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// https://pixi.sh/latest/integration/editor/vscode/#devcontainer-extension
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{
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"name": "xarray-tutorial",
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"build": {
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"dockerfile": "./Dockerfile",
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"context": "../conda"
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},
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"postCreateCommand": {
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"
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},
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"hostRequirements": {
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"cpus": 2
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"dockerfile": "Dockerfile",
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"context": ".."
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},
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"customizations": {
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"codespaces": {
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"openFiles": ["README.md"]
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},
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"vscode": {
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"extensions": ["ms-toolsai.jupyter", "ms-python.python"]
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"settings": {},
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"extensions": [
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"ms-toolsai.jupyter",
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"ms-python.python",
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"executablebookproject.myst-highlight"
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]
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}
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},
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"features": {
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// ensure GitHub Codespace 'Open with JupyterLab' works
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// TODO: figure out why it doesn't work w/ jupyterlab in the pixi environment
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"ghcr.io/devcontainers/features/python:1": {
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"version": "3.12",
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"installTools": false,
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// NOTE: not working, so install with pip in postCreateCommand
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// "toolsToInstall":"jupyterlab_myst,pixi-kernel",
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"installJupyterlab": true
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}
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},
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"mounts": [
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"source=${localWorkspaceFolderBasename}-pixi,target=${containerWorkspaceFolder}/.pixi,type=volume"
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],
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// These should execute in order below
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"onCreateCommand": {
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"configure_jupyterlab": "pip install jupyterlab_myst pixi-kernel"
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},
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"postCreateCommand": {
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"set_pixi_permissions": "sudo chown vscode .pixi"
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},
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"postStartCommand": {
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"configure_jupyterlab": "pixi install"
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}
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}

‎.devcontainer/scipy2023/devcontainer.json

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{
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"build": {
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"dockerfile": "../Dockerfile",
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"context": "../../conda"
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},
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"image": "quay.io/pangeo/pangeo-notebook:2023.07.05",
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"postCreateCommand": {
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"jupyterlab": "mkdir /home/jovyan/.jupyter && cp ${containerWorkspaceFolder}/.devcontainer/scipy2023/jupyter_lab_config.py /home/jovyan/.jupyter/jupyter_lab_config.py",
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/scipy2023/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"

‎.devcontainer/scipy2023/jupyter_lab_config.py

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# Configuration file for lab.
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c = get_config() # noqa
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## The default URL to redirect to from `/`
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# Default: '/lab'
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c.LabApp.default_url = '/lab/tree/workshops/scipy2023/index.ipynb'
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## Set the Access-Control-Allow-Origin header
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#
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# Use '*' to allow any origin to access your server.
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#
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# Takes precedence over allow_origin_pat.
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# Default: ''
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c.ServerApp.allow_origin = '*'

‎.devcontainer/scipy2024/devcontainer.json

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{
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"build": {
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"dockerfile": "../Dockerfile",
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"context": "../../conda"
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},
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"image": "quay.io/pangeo/pangeo-notebook:2024.07.08",
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"postCreateCommand": {
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"jupyterlab": "mkdir /home/jovyan/.jupyter && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/jupyter_lab_config.py /home/jovyan/.jupyter/jupyter_lab_config.py",
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"

‎.devcontainer/scipy2024/jupyter_lab_config.py

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# Configuration file for lab.
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c = get_config() # noqa
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## The default URL to redirect to from `/`
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# Default: '/lab'
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c.LabApp.default_url = '/lab/tree/workshops/scipy2024/index.ipynb'
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## Set the Access-Control-Allow-Origin header
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#
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# Use '*' to allow any origin to access your server.
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#
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# Takes precedence over allow_origin_pat.
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# Default: ''
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c.ServerApp.allow_origin = '*'

‎.devcontainer/scipy2025/Dockerfile

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FROM mcr.microsoft.com/devcontainers/base:noble
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ARG PIXI_VERSION=v0.49.0
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RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix-dev/pixi/releases/download/${PIXI_VERSION}/pixi-$(uname -m)-unknown-linux-musl" \
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&& chmod +x /usr/local/bin/pixi \
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&& pixi info
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# set some user and workdir settings to work nicely with vscode
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USER vscode
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WORKDIR /home/vscode
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RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc

‎.devcontainer/scipy2025/devcontainer.json

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// https://pixi.sh/latest/integration/editor/vscode/#devcontainer-extension
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{
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"name": "scipy2025-xarray-tutorial",
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"build": {
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"dockerfile": "Dockerfile",
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"context": "../../"
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},
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"customizations": {
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"vscode": {
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"settings": {},
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"extensions": [
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"ms-toolsai.jupyter",
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"ms-python.python",
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"executablebookproject.myst-highlight"
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]
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}
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},
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"features": {
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// ensure GitHub Codespace 'Open with JupyterLab' works
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// TODO: figure out why it doesn't work w/ jupyterlab in the pixi environment
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"ghcr.io/devcontainers/features/python:1": {
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"version": "3.12",
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"installTools": false,
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// NOTE: not working, so install with pip in postCreateCommand
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// "toolsToInstall":"jupyterlab_myst,pixi-kernel",
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"installJupyterlab": true
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}
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},
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"mounts": [
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"source=${localWorkspaceFolderBasename}-pixi,target=${containerWorkspaceFolder}/.pixi,type=volume"
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],
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// These should execute in order below
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"onCreateCommand": {
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"configure_jupyterlab": "pip install jupyterlab_myst pixi-kernel"
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},
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"postCreateCommand": {
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"set_pixi_permissions": "sudo chown vscode .pixi"
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},
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"postStartCommand": {
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"configure_jupyterlab": "pixi install"
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}
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}

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