Add `isolevelType:"value"` to default map parameters

[TJGorrie]

fragalysis-frontend/js/components/nglView/renderingObjects.js

Lines 394 to 436 in 0e67527

	const showDensity = ({ stage, input_dict, object_name, representations, dispatch }) => {
	let densityParams_event = {
	color: input_dict.color_DENSITY,
	isolevel: input_dict.isolevel_DENSITY,
	smooth: input_dict.smooth || 0,
	boxSize: input_dict.boxSize_DENSITY,
	contour: input_dict.contour_DENSITY,
	wrap: true,
	opacity: input_dict.opacity_DENSITY,
	opaqueBack: false
	};
	let densityParams_sigmaa = {
	color: input_dict.color_DENSITY_MAP_sigmaa,
	isolevel: input_dict.isolevel_DENSITY_MAP_sigmaa,
	smooth: input_dict.smooth || 0,
	boxSize: input_dict.boxSize_DENSITY_MAP_sigmaa,
	contour: input_dict.contour_DENSITY_MAP_sigmaa,
	wrap: true,
	opacity: input_dict.opacity_DENSITY_MAP_sigmaa,
	opaqueBack: false
	};
	let densityParams_diff = {
	color: input_dict.color_DENSITY_MAP_diff,
	isolevel: input_dict.isolevel_DENSITY_MAP_diff,
	smooth: input_dict.smooth || 0,
	boxSize: input_dict.boxSize_DENSITY_MAP_diff,
	contour: input_dict.contour_DENSITY_MAP_diff,
	wrap: true,
	opacity: input_dict.opacity_DENSITY_MAP_diff,
	opaqueBack: false,
	negateIsolevel: false
	};
	let densityParams_diff_negate = {
	color: input_dict.color_DENSITY_MAP_diff_negate,
	isolevel: input_dict.isolevel_DENSITY_MAP_diff,
	smooth: input_dict.smooth || 0,
	boxSize: input_dict.boxSize_DENSITY_MAP_diff,
	contour: input_dict.contour_DENSITY_MAP_diff,
	wrap: true,
	opacity: input_dict.opacity_DENSITY_MAP_diff,
	opaqueBack: false,
	negateIsolevel: true
	};

Following our previous conversations about fixing fragalysis-api maps. Providing that fofc and 2fofc maps get Z-Score normalised (the now current behaviour of fragalysis-api) we will need to specify that all electron densities be rendered using isolevelType: "value" in addition to all the other defaults.

  let densityParams_sigmaa = {
    color: input_dict.color_DENSITY_MAP_sigmaa,
    isolevel: input_dict.isolevel_DENSITY_MAP_sigmaa,
    smooth: input_dict.smooth || 0,
    boxSize: input_dict.boxSize_DENSITY_MAP_sigmaa,
    contour: input_dict.contour_DENSITY_MAP_sigmaa,
    wrap: true,
    opacity: input_dict.opacity_DENSITY_MAP_sigmaa,
    opaqueBack: false,
    isolevelType: "value"
  };
  let densityParams_diff = {
    color: input_dict.color_DENSITY_MAP_diff,
    isolevel: input_dict.isolevel_DENSITY_MAP_diff,
    smooth: input_dict.smooth || 0,
    boxSize: input_dict.boxSize_DENSITY_MAP_diff,
    contour: input_dict.contour_DENSITY_MAP_diff,
    wrap: true,
    opacity: input_dict.opacity_DENSITY_MAP_diff,
    opaqueBack: false,
    negateIsolevel: false,
    isolevelType: "value"
  };
  let densityParams_diff_negate = {
    color: input_dict.color_DENSITY_MAP_diff_negate,
    isolevel: input_dict.isolevel_DENSITY_MAP_diff,
    smooth: input_dict.smooth || 0,
    boxSize: input_dict.boxSize_DENSITY_MAP_diff,
    contour: input_dict.contour_DENSITY_MAP_diff,
    wrap: true,
    opacity: input_dict.opacity_DENSITY_MAP_diff,
    opaqueBack: false,
    negateIsolevel: true,
    isolevelType: "value"
  };

Should do the trick.

But we only need to do this when we next to an Mpro upload.