UpdateLog.md

Update Log

1/16/2021 Version 2.6.2

1. Option: -w option was implemented. Now users can specify the frequency of multiple sequence alignment. ... to be released by Code Ocean

1/16/2021 Version 2.6.1

1. Option: Debug for a combination of options "-u -p MP" ... used for epPCR experiment

1/16/2021 Version 2.6.0

1. Option: -E and -u option revived. Now FRACTAL can take indel pattern or unaligned sequences as an input. ... used for tree reconstruction of unaligned sequences

11/14/2020 Version 2.5.0

1. Option: -g option was released. FRACTAL was enabled to gzip heavy intermediate files. ... used for FRACTALized Casssiopeia experiment

7/21/2020 Version 2.4.0

1. Option: -P option was released. FRACTAL was enabled to get a robust placement result.

7/21/2020 Version 2.3.0

1. Option: -E option was released. FRACTAL was enabled to treat edit list.

Version 2.1.0-2.2.0

1. Small debugs

5/5/2020 Version 2.0.0

1. Debug for avoiding an possible inifinite loop

5/4/2020 Version 1.6.0

1. Option : -u option was released to treat unaligned sequences
2. Option : -l option was released to set the upper limit of FRACTAL iteration to avoid generating too much intermediate files

5/3/2020 Version 1.5.0

1. Option : -p option was released to select a method for phylogenetic placement
2. Option : previous -p option was replaced with -a option

4/13/2020 Version 1.4.0

1. Option : -s option was released to use a lineage estimation software of choice

3/8/2020 Version 1.3.0

1. Option : names of some options were changed

10/15/2019 Version 1.2.0

1. Option : Setting job name was enabled

8/3/2019 Version 1.1.0

1. Option : options were changed

8/1/2019 Version 1.0.0

1. First release of FRACTAL