1919
2020# Download pre-built executables and test data (recommended)
2121# Linux
22- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_x64 -linux.tar.gz
23- tar -zxvf longcallD-v0.0.2_x64 -linux.tar.gz && cd longcallD-v0.0.2_x64 -linux
22+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_x64 -linux.tar.gz
23+ tar -zxvf longcallD-v0.0.3_x64 -linux.tar.gz && cd longcallD-v0.0.3_x64 -linux
2424# MacOS
25- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_arm64 -macos.tar.gz
26- tar -zxvf longcallD-v0.0.2_arm64 -macos.tar.gz && cd longcallD-v0.0.2_arm64 -macos
25+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_arm64 -macos.tar.gz
26+ tar -zxvf longcallD-v0.0.3_arm64 -macos.tar.gz && cd longcallD-v0.0.3_arm64 -macos
2727
2828# PacBio HiFi reads
2929./longcallD call ./test_data/chr11_2M.fa ./test_data/HG002_chr11_hifi_test.bam --hifi > HG002_hifi_test.vcf
@@ -35,7 +35,7 @@ man ./longcallD.1
3535``` -->
3636
3737## Table of Contents
38- - [ Updates (pre-release v0.0.2 )] ( #updates-pre-release-v002 )
38+ - [ Updates (pre-release v0.0.3 )] ( #updates-pre-release-v003 )
3939- [ Getting Started] ( #getting-started )
4040- [ Table of Contents] ( #table-of-contents )
4141- [ Introduction] ( #introduction )
@@ -60,22 +60,22 @@ LongcallD phases long reads into haplotypes using SNPs and small indels before c
6060### Pre-built executables (recommended)
6161** For Linux:**
6262```
63- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_x64 -linux.tar.gz
64- tar -zxvf longcallD-v0.0.2_x64 -linux.tar.gz
63+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_x64 -linux.tar.gz
64+ tar -zxvf longcallD-v0.0.3_x64 -linux.tar.gz
6565```
6666** For macOS:**
6767```
68- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2_arm64 -macos.tar.gz
69- tar -zxvf longcallD-v0.0.2_arm64 -macos.tar.gz
68+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3_arm64 -macos.tar.gz
69+ tar -zxvf longcallD-v0.0.3_arm64 -macos.tar.gz
7070```
7171
7272### Build from source
7373To compile longcallD from source, ensure you have ** GCC/clang(9.0+)** and ** zlib** installed.
7474It is recommended to use the [ latest release] ( https://github.com/yangao07/longcallD/releases ) .
7575```
76- wget https://github.com/yangao07/longcallD/releases/download/v0.0.2 /longcallD-v0.0.2 .tar.gz
77- tar -zxvf longcallD-v0.0.2 .tar.gz
78- cd longcallD-v0.0.2 ; make
76+ wget https://github.com/yangao07/longcallD/releases/download/v0.0.3 /longcallD-v0.0.3 .tar.gz
77+ tar -zxvf longcallD-v0.0.3 .tar.gz
78+ cd longcallD-v0.0.3 ; make
7979```
8080
8181## Usage
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