not yet worked out test for CorticalThickness -- we need an array of Files!

Author: yarikoptic

gears/nipype/ants/segmentation/CorticalThickness/manifest.json

@@ -4,7 +4,7 @@
   "author": "Yaroslav O. Halchenko",
   "maintainer": "Yaroslav O. Halchenko <[email protected]>",
   "license": "BSD-3-Clause",
-  "version": "0.1.dev.nipype.1.0.3.2",
+  "version": "0.1.dev.nipype.1.0.3.3",
   "config": {
     "dimension": {
       "type": "integer",
@@ -180,9 +180,9 @@
       "suite": "ANTS 2"
     },
     "gear-builder": {
-      "image": "gearificator/nipype-interfaces-ants-segmentation-corticalthickness:0.1.dev.nipype.1.0.3.2"
+      "image": "gearificator/nipype-interfaces-ants-segmentation-corticalthickness:0.1.dev.nipype.1.0.3.3"
     },
-    "docker-image": "gearificator/nipype-interfaces-ants-segmentation-corticalthickness:0.1.dev.nipype.1.0.3.2"
+    "docker-image": "gearificator/nipype-interfaces-ants-segmentation-corticalthickness:0.1.dev.nipype.1.0.3.3"
   },
   "label": "CorticalThickness"
 }

gears/nipype/ants/segmentation/CorticalThickness/tests/ntustison.yaml

@@ -0,0 +1,16 @@
+# uses/mimics https://github.com/ntustison/antsCorticalThicknessExample
+inputs:
+  anatomical_image: antsCorticalThicknessExample/IXI002-Guys-0828-T1_slice90.nii.gz
+  brain_template: antsCorticalThicknessExample/Template/template_slice80.nii.gz
+  brain_probability_mask: antsCorticalThicknessExample/Template/template_cerebrum_mask_slice80.nii.gz
+  # Following "upstream" way wouldn't work
+  #segmentation_priors: antsCorticalThicknessExample/Template/prior%d_slice80.nii.gz
+  # and we cannot use InputMultiPath array, so we would point only to a single prior
+  # but that is not good enough - we need to specify 4!  TODO?!
+  segmentation_priors: antsCorticalThicknessExample/Template/prior1_slice80.nii.gz
+  # Reusing brain_template from above.  Must be specified
+  t1_registration_template: antsCorticalThicknessExample/Template/template_slice80.nii.gz
+config:
+  dimension: 2
+  out_prefix: geartest
+