fix: upgrade to pausable onchain

Author: uri-99

contracts/script/deploy/AlignedLayerDeployer.s.sol

@@ -859,7 +859,6 @@ contract AlignedLayerDeployer is ExistingDeploymentParser {
         );
         vm.serializeAddress(permissions, "alignedLayerChurner", churner);
         vm.serializeAddress(permissions, "alignedLayerPauser", pauserAddress);
-        vm.serializeAddress(permissions, "pauserRegistry", pauser);
         vm.serializeAddress(permissions, "alignedLayerAggregator", alignedLayerAggregator);
 
         string memory permissions_output = vm.serializeAddress(

contracts/script/upgrade/AlignedLayerPauserUpgrader.s.sol

@@ -80,36 +80,41 @@ contract AlignedLayerPauserUpgrader is Script {
         vm.startBroadcast();
 
         AlignedLayerServiceManager alignedLayerServiceManagerImplementation = new AlignedLayerServiceManager(
-            avsDirectory,
-            rewardsCoordinator,
-            registryCoordinator,
-            stakeRegistry
-        );
+                avsDirectory,
+                rewardsCoordinator,
+                registryCoordinator,
+                stakeRegistry
+            );
 
         vm.stopBroadcast();
+        vm.startBroadcast();
 
         // alignedLayerServiceManager is the proxy
         AlignedLayerServiceManager alignedLayerServiceManager = AlignedLayerServiceManager(
-            payable(
-                stdJson.readAddress(
+                payable(
+                    stdJson.readAddress(
                         aligned_deployment_file,
                         ".addresses.alignedLayerServiceManager"
+                    )
                 )
-            )
-        );
+            );
 
+        vm.stopBroadcast();
         vm.startBroadcast();
 
-        alignedLayerProxyAdmin.upgradeAndCall(
+        alignedLayerProxyAdmin.upgrade(
             TransparentUpgradeableProxy(
                 payable(address(alignedLayerServiceManager))
             ),
-            address(alignedLayerServiceManagerImplementation),
-            abi.encodeWithSelector(
-                AlignedLayerServiceManager.initializePauser.selector,
-                pauserRegistry,
-                initialPausedStatus
-            )
+            address(alignedLayerServiceManagerImplementation)
+        );
+
+        vm.stopBroadcast();
+        vm.startBroadcast();
+
+        alignedLayerServiceManager.initializePauser(
+            pauserRegistry,
+            initialPausedStatus
         );
 
         vm.stopBroadcast();

contracts/scripts/anvil/state/alignedlayer-deployed-anvil-state.json

@@ -18,3 +18,6 @@ forge script script/deploy/PauserRegistryDeployer.s.sol \
     --broadcast \
     --sig "run(string memory existingDeploymentInfoPath, string memory deployConfigPath, string memory outputPath)" \
     --slow
+
+# TODO fix: this deploy is overwritting the whole deployment output file,
+# it should only add the new contract value