fix: replace comm with grep to support uutils coreutils

Ubuntu 25.04+ replaced GNU coreutils with uutils coreutils, a Rust-based
reimplementation of Unix core utilities. These are different projects
with the same package name:

- GNU coreutils 9.x (C) - Ubuntu ≤24.04
- uutils coreutils 0.x (Rust) - Ubuntu ≥25.04

The uutils comm doesn't recognize sort output as sorted, causing
"comm: file is not in sorted order" errors.

Replace comm patterns with:
- grep -vxFf for set difference (lines in B but not in A)
- sort | uniq -d for finding duplicates

These alternatives don't depend on comm, ensuring compatibility
with both GNU and uutils coreutils.

Author: cantalupo555

extensions/gen-sample-extension-docs.sh

@@ -49,7 +49,8 @@ MASTER_HEADER
 
 	[[ $HOOK_POINT_CALLS_COUNT -gt $HOOK_POINT_CALLS_UNIQUE_COUNT ]] && {
 		# Some hook points were called multiple times, determine which.
-		HOOK_POINTS_WITH_MULTIPLE_CALLS=$(comm -13 <(sort < "${EXTENSION_MANAGER_TMP_DIR}/hook_point_calls.txt" | uniq) <(sort < "${EXTENSION_MANAGER_TMP_DIR}/hook_point_calls.txt") | sort | uniq | xargs echo -n)
+		# Find duplicates without comm (uutils coreutils compatible)
+		HOOK_POINTS_WITH_MULTIPLE_CALLS=$(sort < "${EXTENSION_MANAGER_TMP_DIR}/hook_point_calls.txt" | uniq -d | xargs echo -n)
 
 		cat << MULTIPLE_CALLS_WARNING
 - *Important:* The following hook points where called multiple times during the documentation generation. This can be indicative of a bug in the build system. Please check the sources for the invocation of the following hooks: \`${HOOK_POINTS_WITH_MULTIPLE_CALLS}\`.

lib/functions/general/extensions.sh

@@ -510,8 +510,8 @@ function enable_extension() {
 	after_function_list="$(compgen -A function)"
 
 	# compare before and after, thus getting the functions defined by the extension.
-	# comm is oldskool. we like it. go "man comm" to understand -13 below
-	new_function_list="$(comm -13 <(echo "$before_function_list" | sort) <(echo "$after_function_list" | sort))"
+	# Avoid comm for uutils coreutils compatibility
+	new_function_list="$(grep -vxFf <(echo "$before_function_list") <(echo "$after_function_list") || true)"
 
 	# iterate over defined functions, store them in global associative array extension_function_info
 	for newly_defined_function in ${new_function_list}; do

lib/functions/logging/capture.sh

@@ -18,7 +18,8 @@ function do_capturing_defs() {
 
 	post_exec_vars="$(compgen -A variable)"
 
-	new_vars_list="$(comm -13 <(echo "$pre_exec_vars" | grep -E '[[:upper:]]+' | grep -v -e "^BASH_" | sort) <(echo "${post_exec_vars}" | grep -E '[[:upper:]]+' | grep -v -e "^BASH_" | sort))"
+	# Avoid comm for uutils coreutils compatibility
+	new_vars_list="$(grep -vxFf <(echo "$pre_exec_vars" | grep -E '[[:upper:]]+' | grep -v -e "^BASH_") <(echo "${post_exec_vars}" | grep -E '[[:upper:]]+' | grep -v -e "^BASH_") || true)"
 
 	for onevar in ${new_vars_list}; do
 		all_vars_array+=("$(declare -p "${onevar}")")