Remove patch that is unneeded at build time

Author: agriyakhetarpal

.github/workflows/ci-emscripten.yaml

@@ -60,7 +60,6 @@ jobs:
         run: |
           patch -p1 < tools/ci/patches/0001-disable-multiprocessing-and-pthreads.patch
           patch -p1 < tools/ci/patches/0002-add-missing-unistd-headers.patch
-          patch -d $EMSDK/upstream/emscripten/ -p1 < tools/ci/patches/0003-fix-npy-file-access.patch
 
       - name: Install pyodide-build
         run: python -m pip install "pydantic<2" "pyodide-build==${{ env.PYODIDE_VERSION }}"
@@ -94,7 +93,6 @@ jobs:
       - name: Checkout necessary patch(es)
         uses: actions/checkout@v4
         with:
-          # Check out a single file
           sparse-checkout: tools/ci/patches/0003-fix-npy-file-access.patch
           sparse-checkout-cone-mode: false