Merge branch 'main' of github.com:zarr-developers/zarr-python into fix/consistent-create-array-signature

Author: d-v-b

.github/ISSUE_TEMPLATE/config.yml

@@ -5,7 +5,7 @@ contact_links:
     about: A new major feature should be discussed in the Zarr specifications repository.
   - name: Discuss something on ZulipChat
     url: https://ossci.zulipchat.com/
-    about: For questions like "How do I do X with Zarr?", you can move to our ZulipChat.
+    about: For questions like "How do I do X with Zarr?", consider posting your question to our developer chat.
   - name: Discuss something on GitHub Discussions
     url: https://github.com/zarr-developers/zarr-python/discussions
     about: For questions like "How do I do X with Zarr?", you can move to GitHub Discussions.

.github/workflows/test.yml

@@ -64,6 +64,7 @@ jobs:
       run: |
         hatch env run --env test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage
     - name: Upload coverage
+      if: ${{ matrix.dependency-set == 'optional' && matrix.os == 'ubuntu-latest' }}
       uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -6,11 +6,11 @@ ci:
 default_stages: [pre-commit, pre-push]
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.9
+    rev: v0.11.9
     hooks:
-    - id: ruff
-      args: ["--fix", "--show-fixes"]
-    - id: ruff-format
+      - id: ruff
+        args: ["--fix", "--show-fixes"]
+      - id: ruff-format
   - repo: https://github.com/codespell-project/codespell
     rev: v2.4.1
     hooks:
@@ -19,8 +19,8 @@ repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v5.0.0
     hooks:
-    - id: check-yaml
-    - id: trailing-whitespace
+      - id: check-yaml
+      - id: trailing-whitespace
   - repo: https://github.com/pre-commit/mirrors-mypy
     rev: v1.15.0
     hooks:
@@ -31,13 +31,16 @@ repos:
           - packaging
           - donfig
           - numcodecs[crc32c]
-          - numpy==2.1  # until https://github.com/numpy/numpy/issues/28034 is resolved
+          - numpy==2.1 # until https://github.com/numpy/numpy/issues/28034 is resolved
           - typing_extensions
           - universal-pathlib
+          - obstore>=0.5.1
           # Tests
           - pytest
+          - hypothesis
+          - s3fs
   - repo: https://github.com/scientific-python/cookie
-    rev: 2025.01.22
+    rev: 2025.05.02
     hooks:
       - id: sp-repo-review
   - repo: https://github.com/pre-commit/pygrep-hooks

README.md

@@ -70,7 +70,7 @@
   </td>
 </tr>
 <tr>
-	<td>Zulip</td>
+	<td>Developer Chat</td>
 	<td>
 		<a href="https://ossci.zulipchat.com/">
 		<img src="https://img.shields.io/badge/zulip-join_chat-brightgreen.svg" />
@@ -101,13 +101,13 @@ Zarr is a Python package providing an implementation of compressed, chunked, N-d
 
 ## Main Features
 
-- [**Create**](https://zarr.readthedocs.io/en/stable/tutorial.html#creating-an-array) N-dimensional arrays with any NumPy `dtype`.
-- [**Chunk arrays**](https://zarr.readthedocs.io/en/stable/tutorial.html#chunk-optimizations) along any dimension.
-- [**Compress**](https://zarr.readthedocs.io/en/stable/tutorial.html#compressors) and/or filter chunks using any NumCodecs codec.
-- [**Store arrays**](https://zarr.readthedocs.io/en/stable/tutorial.html#tutorial-storage) in memory, on disk, inside a zip file, on S3, etc...
-- [**Read**](https://zarr.readthedocs.io/en/stable/tutorial.html#reading-and-writing-data) an array [**concurrently**](https://zarr.readthedocs.io/en/stable/tutorial.html#parallel-computing-and-synchronization) from multiple threads or processes.
-- Write to an array concurrently from multiple threads or processes.
-- Organize arrays into hierarchies via [**groups**](https://zarr.readthedocs.io/en/stable/tutorial.html#groups).
+- [**Create**](https://zarr.readthedocs.io/en/stable/user-guide/arrays.html#creating-an-array) N-dimensional arrays with any NumPy `dtype`.
+- [**Chunk arrays**](https://zarr.readthedocs.io/en/stable/user-guide/performance.html#chunk-optimizations) along any dimension.
+- [**Compress**](https://zarr.readthedocs.io/en/stable/user-guide/arrays.html#compressors) and/or filter chunks using any NumCodecs codec.
+- [**Store arrays**](https://zarr.readthedocs.io/en/stable/user-guide/storage.html) in memory, on disk, inside a zip file, on S3, etc...
+- [**Read**](https://zarr.readthedocs.io/en/stable/user-guide/arrays.html#reading-and-writing-data) an array [**concurrently**](https://zarr.readthedocs.io/en/stable/user-guide/performance.html#parallel-computing-and-synchronization) from multiple threads or processes.
+- [**Write**](https://zarr.readthedocs.io/en/stable/user-guide/arrays.html#reading-and-writing-data) to an array concurrently from multiple threads or processes.
+- Organize arrays into hierarchies via [**groups**](https://zarr.readthedocs.io/en/stable/quickstart.html#hierarchical-groups).
 
 ## Where to get it