Merge remote-tracking branch 'upstream/main' into tom/fix/public-buffers

Author: TomAugspurger

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -57,7 +57,22 @@ body:
     id: reproduce
     attributes:
       label: Steps to reproduce
-      description: Minimal, reproducible code sample, a copy-pastable example if possible.
+      description: Minimal, reproducible code sample. Must list dependencies in [inline script metadata](https://packaging.python.org/en/latest/specifications/inline-script-metadata/#example). When put in a file named `issue.py` calling `uv run issue.py` should show the issue.
+      value: |
+        ```python
+        # /// script
+        # requires-python = ">=3.11"
+        # dependencies = [
+        #   "zarr@git+https://github.com/zarr-developers/zarr-python.git@main",
+        # ]
+        # ///
+        #
+        # This script automatically imports the development branch of zarr to check for issues
+
+        import zarr
+        # your reproducer code
+        # zarr.print_debug_info()
+        ```
     validations:
       required: true
   - type: textarea

.github/workflows/gpu_test.yml

@@ -25,7 +25,7 @@ jobs:
     strategy:
       matrix:
         python-version: ['3.11']
-        numpy-version: ['2.1']
+        numpy-version: ['2.2']
         dependency-set: ["minimal"]
 
     steps:

.github/workflows/hypothesis.yaml

@@ -26,7 +26,7 @@ jobs:
     strategy:
       matrix:
         python-version: ['3.11']
-        numpy-version: ['2.1']
+        numpy-version: ['2.2']
         dependency-set: ["optional"]
 
     steps:

.github/workflows/test.yml

@@ -21,7 +21,7 @@ jobs:
     strategy:
       matrix:
         python-version: ['3.11', '3.12', '3.13']
-        numpy-version: ['1.25', '2.1']
+        numpy-version: ['1.25', '2.2']
         dependency-set: ["minimal", "optional"]
         os: ["ubuntu-latest"]
         include:
@@ -30,15 +30,15 @@ jobs:
             dependency-set: 'optional'
             os: 'macos-latest'
           - python-version: '3.13'
-            numpy-version: '2.1'
+            numpy-version: '2.2'
             dependency-set: 'optional'
             os: 'macos-latest'
           - python-version: '3.11'
             numpy-version: '1.25'
             dependency-set: 'optional'
             os: 'windows-latest'
           - python-version: '3.13'
-            numpy-version: '2.1'
+            numpy-version: '2.2'
             dependency-set: 'optional'
             os: 'windows-latest'
     runs-on: ${{ matrix.os }}
@@ -64,6 +64,7 @@ jobs:
       run: |
         hatch env run --env test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage
     - name: Upload coverage
+      if: ${{ matrix.dependency-set == 'optional' && matrix.os == 'ubuntu-latest' }}
       uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ ci:
 default_stages: [pre-commit, pre-push]
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.9
+    rev: v0.11.9
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -37,8 +37,10 @@ repos:
           - obstore>=0.5.1
           # Tests
           - pytest
+          - hypothesis
+          - s3fs
   - repo: https://github.com/scientific-python/cookie
-    rev: 2025.01.22
+    rev: 2025.05.02
     hooks:
       - id: sp-repo-review
   - repo: https://github.com/pre-commit/pygrep-hooks

changes/1661.feature.rst

@@ -0,0 +1 @@
+Ignore stale child metadata when reconsolidating metadata.

changes/2921.bugfix.rst

@@ -0,0 +1 @@
+Implemented ``move`` for ``LocalStore`` and ``ZipStore``. This allows users to move the store to a different root path.

changes/2924.chore.rst

@@ -0,0 +1 @@
+Added `~zarr.errors.GroupNotFoundError`, which is raised when attempting to open a group that does not exist.