Merge branch 'main' into add-enter-exit

Author: dikwickley

.github/ISSUE_TEMPLATE/config.yml

@@ -5,7 +5,7 @@ contact_links:
     about: A new major feature should be discussed in the Zarr specifications repository.
   - name: Discuss something on ZulipChat
     url: https://ossci.zulipchat.com/
-    about: For questions like "How do I do X with Zarr?", you can move to our ZulipChat.
+    about: For questions like "How do I do X with Zarr?", consider posting your question to our developer chat.
   - name: Discuss something on GitHub Discussions
     url: https://github.com/zarr-developers/zarr-python/discussions
     about: For questions like "How do I do X with Zarr?", you can move to GitHub Discussions.

.github/PULL_REQUEST_TEMPLATE.md

@@ -3,7 +3,7 @@
 TODO:
 * [ ] Add unit tests and/or doctests in docstrings
 * [ ] Add docstrings and API docs for any new/modified user-facing classes and functions
-* [ ] New/modified features documented in docs/tutorial.rst
-* [ ] Changes documented in docs/release.rst
+* [ ] New/modified features documented in `docs/user-guide/*.rst`
+* [ ] Changes documented as a new file in `changes/`
 * [ ] GitHub Actions have all passed
 * [ ] Test coverage is 100% (Codecov passes)

.github/dependabot.yml

@@ -1,15 +1,7 @@
 ---
 version: 2
 updates:
-  # Updates for v3 branch (the default branch)
-  - package-ecosystem: "pip"
-    directory: "/"
-    schedule:
-      interval: "daily"
-    groups:
-      actions:
-        patterns:
-          - "*"
+  # Updates for main
   - package-ecosystem: "github-actions"
     directory: "/"
     schedule:
@@ -19,19 +11,19 @@ updates:
         patterns:
           - "*"
 
-  # Same updates, but for main branch
+  # Updates for support/v2 branch
   - package-ecosystem: "pip"
     directory: "/"
-    target-branch: "main"
+    target-branch: "support/v2"
     schedule:
-      interval: "daily"
+      interval: "weekly"
     groups:
       requirements:
         patterns:
           - "*"
   - package-ecosystem: "github-actions"
     directory: "/"
-    target-branch: "main"
+    target-branch: "support/v2"
     schedule:
       interval: "weekly"
     groups:

.github/labeler.yml

@@ -1,2 +1,4 @@
 needs release notes:
-- all: ['!docs/release.rst']
+  - all:
+    - changed-files:
+      - all-globs-to-all-files: '!changes/*.rst'

.github/workflows/gpu_test.yml

@@ -64,3 +64,9 @@ jobs:
     - name: Run Tests
       run: |
         hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage
+
+    - name: Upload coverage
+      uses: codecov/codecov-action@13ce06bfc6bbe3ecf90edbbf1bc32fe5978ca1d3  # v5.3.1
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        verbose: true # optional (default = false)

.github/workflows/hypothesis.yaml

@@ -69,6 +69,12 @@ jobs:
         path: .hypothesis/
         key: cache-hypothesis-${{ runner.os }}-${{ github.run_id }}
 
+    - name: Upload coverage
+      uses: codecov/codecov-action@v5
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        verbose: true # optional (default = false)
+
     - name: Generate and publish the report
       if: |
         failure()

.github/workflows/needs_release_notes.yml

@@ -4,11 +4,14 @@ on:
   - pull_request_target
 
 jobs:
-  triage:
+  labeler:
     if: ${{ github.event.pull_request.user.login != 'dependabot[bot]' }} && ${{ github.event.pull_request.user.login != 'pre-commit-ci[bot]' }}
+    permissions:
+      contents: read
+      pull-requests: write
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/labeler@main
+    - uses: actions/labeler@8558fd74291d67161a8a78ce36a881fa63b766a9  # v5.0.0
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         sync-labels: true

.github/workflows/releases.yml

@@ -55,7 +55,7 @@ jobs:
         with:
           name: releases
           path: dist
-      - uses: pypa/[email protected].3
+      - uses: pypa/[email protected].4
         with:
           user: __token__
           password: ${{ secrets.pypi_password }}

.github/workflows/test.yml

@@ -45,6 +45,8 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # grab all branches and tags
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
@@ -82,6 +84,8 @@ jobs:
             dependency-set: upstream
     steps:
     - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
@@ -98,6 +102,11 @@ jobs:
     - name: Run Tests
       run: |
         hatch env run --env ${{ matrix.dependency-set }} run
+    - name: Upload coverage
+      uses: codecov/codecov-action@v5
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        verbose: true # optional (default = false)
 
   doctests:
     name: doctests

.gitignore

@@ -83,6 +83,7 @@ src/zarr/_version.py
 data/*
 src/fixture/
 fixture/
+junit.xml
 
 .DS_Store
 tests/.hypothesis