Update ruff and associated changes (#2522)

* Upgrade ruff to 0.8.1

Remove deprecated rules:
https://astral.sh/blog/ruff-v0.8.0#removal-of-six-deprecated-rules

* Apply ruff/flake8-pyi rule PYI061

PYI061 `Literal[None, ...]` can be replaced with `Literal[...] | None`

Author: DimitriPapadopoulos

.pre-commit-config.yaml

@@ -7,7 +7,7 @@ default_language_version:
   python: python3
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.0
+    rev: v0.8.1
     hooks:
     - id: ruff
       args: ["--fix", "--show-fixes"]

pyproject.toml

@@ -294,19 +294,14 @@ extend-select = [
     "W",    # pycodestyle warnings
 ]
 ignore = [
-    "ANN101", # deprecated
-    "ANN102", # deprecated
     "ANN401",
-    "PT004",  # deprecated
-    "PT005",  # deprecated
     "PT011",  # TODO: apply this rule
     "PT012",  # TODO: apply this rule
     "RET505",
     "RET506",
     "RUF005",
     "SIM108",
     "TRY003",
-    "UP027",  # deprecated
     "UP038",  # https://github.com/astral-sh/ruff/issues/7871
     # https://docs.astral.sh/ruff/formatter/#conflicting-lint-rules
     "W191",

src/zarr/core/group.py

@@ -434,7 +434,7 @@ async def from_store(
     async def open(
         cls,
         store: StoreLike,
-        zarr_format: Literal[2, 3, None] = 3,
+        zarr_format: Literal[2, 3] | None = 3,
         use_consolidated: bool | str | None = None,
     ) -> AsyncGroup:
         """Open a new AsyncGroup
@@ -1691,7 +1691,7 @@ def from_store(
     def open(
         cls,
         store: StoreLike,
-        zarr_format: Literal[2, 3, None] = 3,
+        zarr_format: Literal[2, 3] | None = 3,
     ) -> Group:
         """Open a group from an initialized store.