Turn off GL09

Author: dstansby

pyproject.toml

@@ -7,9 +7,7 @@ build-backend = "hatchling.build"
 name = "zarr"
 description = "An implementation of chunked, compressed, N-dimensional arrays for Python"
 readme = { file = "README.md", content-type = "text/markdown" }
-authors = [
-    { name = "Alistair Miles", email = "[email protected]" },
-]
+authors = [{ name = "Alistair Miles", email = "[email protected]" }]
 maintainers = [
     { name = "Davis Bennett", email = "[email protected]" },
     { name = "jakirkham" },
@@ -21,7 +19,7 @@ maintainers = [
     { name = "Ryan Abernathey" },
     { name = "David Stansby" },
     { name = "Tom Augspurger", email = "[email protected]" },
-    { name = "Deepak Cherian" }
+    { name = "Deepak Cherian" },
 ]
 requires-python = ">=3.11"
 # If you add a new dependency here, please also add it to .pre-commit-config.yml
@@ -33,9 +31,7 @@ dependencies = [
     'donfig>=0.8',
 ]
 
-dynamic = [
-  "version",
-]
+dynamic = ["version"]
 classifiers = [
     'Development Status :: 6 - Mature',
     'Intended Audience :: Developers',
@@ -50,17 +46,13 @@ classifiers = [
     'Programming Language :: Python :: 3.12',
     'Programming Language :: Python :: 3.13',
 ]
-license = {text = "MIT License"}
+license = { text = "MIT License" }
 keywords = ["Python", "compressed", "ndimensional-arrays", "zarr"]
 
 [project.optional-dependencies]
 # User extras
-remote = [
-    "fsspec>=2023.10.0",
-]
-gpu = [
-    "cupy-cuda12x",
-]
+remote = ["fsspec>=2023.10.0"]
+gpu = ["cupy-cuda12x"]
 # Development extras
 test = [
     "coverage",
@@ -104,24 +96,18 @@ Homepage = "https://github.com/zarr-developers/zarr-python"
 exclude_lines = [
     "pragma: no cover",
     "pragma: ${PY_MAJOR_VERSION} no cover",
-    '.*\.\.\.' # Ignore "..." lines
+    '.*\.\.\.',                             # Ignore "..." lines
 ]
 
 [tool.coverage.run]
-omit = [
-    "src/zarr/meta_v1.py",
-    "bench/compress_normal.py",
-]
+omit = ["src/zarr/meta_v1.py", "bench/compress_normal.py"]
 
 [tool.hatch]
 version.source = "vcs"
 build.hooks.vcs.version-file = "src/zarr/_version.py"
 
 [tool.hatch.envs.test]
-dependencies = [
-    "numpy~={matrix:numpy}",
-    "universal_pathlib",
-]
+dependencies = ["numpy~={matrix:numpy}", "universal_pathlib"]
 features = ["test"]
 
 [[tool.hatch.envs.test.matrix]]
@@ -158,10 +144,7 @@ fix = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst' --accept"
 list-env = "pip list"
 
 [tool.hatch.envs.gputest]
-dependencies = [
-    "numpy~={matrix:numpy}",
-    "universal_pathlib",
-]
+dependencies = ["numpy~={matrix:numpy}", "universal_pathlib"]
 features = ["test", "gpu"]
 
 [[tool.hatch.envs.gputest.matrix]]
@@ -188,7 +171,7 @@ serve = "sphinx-autobuild docs docs/_build --host 0.0.0.0"
 python = "3.13"
 dependencies = [
     'packaging @ git+https://github.com/pypa/packaging',
-    'numpy',  # from scientific-python-nightly-wheels
+    'numpy',                                                               # from scientific-python-nightly-wheels
     'numcodecs @ git+https://github.com/zarr-developers/numcodecs',
     'fsspec @ git+https://github.com/fsspec/filesystem_spec',
     's3fs @ git+https://github.com/fsspec/s3fs',
@@ -223,7 +206,7 @@ python = "3.11"
 dependencies = [
     'packaging==22.*',
     'numpy==1.25.*',
-    'numcodecs==0.14.*',  # 0.14 needed for zarr3 codecs
+    'numcodecs==0.14.*',         # 0.14 needed for zarr3 codecs
     'fsspec==2022.10.0',
     's3fs==2022.10.0',
     'universal_pathlib==0.0.22',
@@ -261,7 +244,7 @@ extend-exclude = [
     "buck-out",
     "build",
     "dist",
-    "notebooks", # temporary, until we achieve compatibility with ruff ≥ 0.6
+    "notebooks",      # temporary, until we achieve compatibility with ruff ≥ 0.6
     "venv",
     "docs",
     "src/zarr/v2/",
@@ -338,14 +321,12 @@ warn_unreachable = true
 enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
 
 [[tool.mypy.overrides]]
-module = [
-    "zarr.v2.*",
-]
+module = ["zarr.v2.*"]
 ignore_errors = true
 
 [[tool.mypy.overrides]]
 module = [
-    "zarr.testing.stateful",  # lots of hypothesis decorator errors
+    "zarr.testing.stateful",            # lots of hypothesis decorator errors
     "tests.package_with_entrypoint.*",
     "tests.test_codecs.test_codecs",
     "tests.test_codecs.test_transpose",
@@ -371,33 +352,30 @@ doctest_optionflags = [
     "ELLIPSIS",
     "IGNORE_EXCEPTION_DETAIL",
 ]
-addopts = [
-    "--durations=10", "-ra", "--strict-config", "--strict-markers",
-]
+addopts = ["--durations=10", "-ra", "--strict-config", "--strict-markers"]
 filterwarnings = [
     "error:::zarr.*",
     "ignore:PY_SSIZE_T_CLEAN will be required.*:DeprecationWarning",
     "ignore:The loop argument is deprecated since Python 3.8.*:DeprecationWarning",
     "ignore:Creating a zarr.buffer.gpu.*:UserWarning",
-    "ignore:Duplicate name:UserWarning",  # from ZipFile
+    "ignore:Duplicate name:UserWarning",                                                # from ZipFile
     "ignore:.*is currently not part in the Zarr version 3 specification.*:UserWarning",
 ]
-markers = [
-    "gpu: mark a test as requiring CuPy and GPU"
-]
+markers = ["gpu: mark a test as requiring CuPy and GPU"]
 
 [tool.repo-review]
 ignore = [
-	"PC111",  # fix Python code in documentation - enable later
-	"PC180",  # for JavaScript - not interested
+    "PC111", # fix Python code in documentation - enable later
+    "PC180", # for JavaScript - not interested
 ]
 
 [tool.numpydoc_validation]
 # See https://numpydoc.readthedocs.io/en/latest/validation.html#built-in-validation-checks for list of checks
 checks = [
     "GL06",
     "GL07",
-    "GL09",
+    # Currently broken; see https://github.com/numpy/numpydoc/issues/573
+    # "GL09",
     "GL10",
     "SS02",
     "SS04",