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‎.deepsource.toml‎

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‎.github/ISSUE_TEMPLATE/bug_report.yml‎

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name: 🐛 File a bug report
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description: X's behavior is deviating from its documented behavior.
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name: Bug Report
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description: Report incorrect behaviour in the library.
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labels: ["bug"]
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body:
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- type: markdown
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attributes:
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label: Python Version
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description: Version of Python interpreter
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placeholder: 3.8.5, 3.9, 3.10, etc.
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placeholder: 3.10, 3.11, 3.12 etc.
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validations:
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required: true
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- type: input

‎.github/ISSUE_TEMPLATE/config.yml‎

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blank_issues_enabled: true
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contact_links:
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- name: ✨ Propose a new major feature
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- name: Propose a new major feature
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url: https://github.com/zarr-developers/zarr-specs
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about: A new major feature should be discussed in the Zarr specifications repository.
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- name: ❓ Discuss something on gitter
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url: https://gitter.im/zarr-developers/community
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about: For questions like "How do I do X with Zarr?", you can move to our Gitter channel.
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- name: ❓ Discuss something on GitHub Discussions
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- name: Discuss something on ZulipChat
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url: https://ossci.zulipchat.com/
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about: For questions like "How do I do X with Zarr?", you can move to our ZulipChat.
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- name: Discuss something on GitHub Discussions
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url: https://github.com/zarr-developers/zarr-python/discussions
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about: For questions like "How do I do X with Zarr?", you can move to GitHub Discussions.

‎.github/ISSUE_TEMPLATE/documentation.yml‎

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name: Documentation Improvement
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description: Report missing or wrong documentation. Alternatively, you can just open a pull request with the suggested change.
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title: "DOC: "
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labels: [documentation, help wanted]
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body:
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- type: textarea
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attributes:
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label: Describe the issue linked to the documentation
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description: >
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Please provide a description of what documentation you believe needs to be fixed/improved.
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validations:
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required: true
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- type: textarea
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attributes:
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label: Suggested fix for documentation
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description: >
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Please explain the suggested fix and why it's better than the existing documentation.

‎.github/dependabot.yml‎

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---
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version: 2
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updates:
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# Updates for v3 branch (the default branch)
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- package-ecosystem: "pip"
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directory: "/"
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schedule:
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actions:
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patterns:
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- "*"
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# Same updates, but for main branch
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- package-ecosystem: "pip"
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directory: "/"
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target-branch: "main"
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schedule:
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interval: "daily"
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groups:
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requirements:
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patterns:
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- "*"
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- package-ecosystem: "github-actions"
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directory: "/"
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target-branch: "main"
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schedule:
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interval: "weekly"
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groups:
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actions:
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patterns:
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- "*"

‎.github/workflows/codeql-analysis.yml‎

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‎.github/workflows/gpu_test.yml‎

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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
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# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
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name: GPU Test
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on:
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push:
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branches: [ main ]
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pull_request:
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branches: [ main ]
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workflow_dispatch:
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env:
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LD_LIBRARY_PATH: /usr/local/cuda/extras/CUPTI/lib64:/usr/local/cuda/lib64
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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test:
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name: py=${{ matrix.python-version }}, np=${{ matrix.numpy-version }}, deps=${{ matrix.dependency-set }}
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runs-on: gpu-runner
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strategy:
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matrix:
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python-version: ['3.11']
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numpy-version: ['2.1']
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dependency-set: ["minimal"]
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steps:
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- uses: actions/checkout@v4
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# - name: cuda-toolkit
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# uses: Jimver/[email protected]
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# id: cuda-toolkit
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# with:
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# cuda: '12.4.1'
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- name: Set up CUDA
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run: |
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wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-keyring_1.1-1_all.deb
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sudo dpkg -i cuda-keyring_1.1-1_all.deb
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sudo apt-get update
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sudo apt-get -y install cuda-toolkit-12-6
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echo "/usr/local/cuda/bin" >> $GITHUB_PATH
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- name: GPU check
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run: |
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nvidia-smi
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echo $PATH
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echo $LD_LIBRARY_PATH
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nvcc -V
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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cache: 'pip'
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- name: Install Hatch and CuPy
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run: |
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python -m pip install --upgrade pip
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pip install hatch
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- name: Set Up Hatch Env
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run: |
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hatch env create gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }}
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hatch env run -e gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env
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- name: Run Tests
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run: |
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hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage

‎.github/workflows/hypothesis.yaml‎

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name: Slow Hypothesis CI
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on:
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push:
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branches:
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- "main"
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pull_request:
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branches:
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- "main"
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types: [opened, reopened, synchronize, labeled]
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schedule:
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- cron: "0 0 * * *" # Daily “At 00:00” UTC
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workflow_dispatch: # allows you to trigger manually
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env:
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FORCE_COLOR: 3
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jobs:
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hypothesis:
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name: Slow Hypothesis Tests
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runs-on: "ubuntu-latest"
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defaults:
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run:
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shell: bash -l {0}
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strategy:
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matrix:
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python-version: ['3.11']
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numpy-version: ['2.1']
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dependency-set: ["optional"]
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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cache: 'pip'
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- name: Install Hatch
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run: |
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python -m pip install --upgrade pip
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pip install hatch
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- name: Set Up Hatch Env
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run: |
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hatch env create test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }}
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hatch env run -e test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env
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# https://github.com/actions/cache/blob/main/tips-and-workarounds.md#update-a-cache
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- name: Restore cached hypothesis directory
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id: restore-hypothesis-cache
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uses: actions/cache/restore@v4
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with:
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path: .hypothesis/
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key: cache-hypothesis-${{ runner.os }}-${{ github.run_id }}
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restore-keys: |
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cache-hypothesis-
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- name: Run slow Hypothesis tests
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if: success()
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id: status
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run: |
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hatch env run --env test.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-hypothesis
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# explicitly save the cache so it gets updated, also do this even if it fails.
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- name: Save cached hypothesis directory
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id: save-hypothesis-cache
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if: always() && steps.status.outcome != 'skipped'
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uses: actions/cache/save@v4
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with:
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path: .hypothesis/
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key: cache-hypothesis-${{ runner.os }}-${{ github.run_id }}
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- name: Generate and publish the report
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if: |
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failure()
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&& steps.status.outcome == 'failure'
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&& github.event_name == 'schedule'
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&& github.repository_owner == 'zarr-developers'
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uses: xarray-contrib/issue-from-pytest-log@v1
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with:
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log-path: output-${{ matrix.python-version }}-log.jsonl
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issue-title: "Nightly Hypothesis tests failed"
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issue-label: "topic-hypothesis"

‎.github/workflows/releases.yml‎

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submodules: true
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fetch-depth: 0
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- uses: actions/setup-python@v5
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- uses: actions/setup-python@v5.2.0
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name: Install Python
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python-version: '3.11'
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with:
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name: releases
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path: dist
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- uses: pypa/gh-action-pypi-publish@v1.9.0
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- uses: pypa/gh-action-pypi-publish@v1.12.2
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with:
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user: __token__
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password: ${{ secrets.pypi_password }}

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