move v3/tests to tests (#2396)

* move v3/tests to tests and fix various mypy issues

* test(ci): change branch name in v3 workflows (#2368)

* Use lazy % formatting in logging functions (#2366)

* Use lazy % formatting in logging functions

* f-string should be more efficient

* Space before unit symbol

From "SI Unit rules and style conventions":
https://physics.nist.gov/cuu/Units/checklist.html

	There is a space between the numerical value and unit symbol,
	even when the value is used in an adjectival sense, except in
	the case of superscript units for plane angle.

* Enforce ruff/flake8-logging-format rules (G)

---------

Co-authored-by: Joe Hamman <[email protected]>

* Move roadmap and v3-design documument to docs (#2354)

* move roadmap to docs

* formatting and minor copy editing

* Multiple imports for an import name (#2367)

Co-authored-by: Joe Hamman <[email protected]>

* Enforce ruff/pycodestyle warnings (W) (#2369)

* Apply ruff/pycodestyle rule W291

W291 Trailing whitespace

* Enforce ruff/pycodestyle warnings (W)

It looks like `ruff format` does not catch all trailing spaces.

---------

Co-authored-by: Joe Hamman <[email protected]>

* Apply ruff/pycodestyle preview rule E262 (#2370)

E262 Inline comment should start with `# `

Co-authored-by: Joe Hamman <[email protected]>

* Fix typo (#2382)

Co-authored-by: Joe Hamman <[email protected]>

* Imported name is not used anywhere in the module (#2379)

* Missing mandatory keyword argument `shape` (#2376)

* Update ruff rules to ignore (#2374)

Co-authored-by: Joe Hamman <[email protected]>

* Docstrings for arraymodule (#2276)

* start to docstrings for arraymodule

* incorporating toms edits, overriding mypy error...

* fix attrs

* Update src/zarr/core/array.py

Co-authored-by: Sanket Verma <[email protected]>

* fix store -> storage

* remove properties from asyncarray docstring

---------

Co-authored-by: Sanket Verma <[email protected]>
Co-authored-by: Joe Hamman <[email protected]>

* fix/normalize storage paths (#2384)

* bring in path normalization function from v2, and add a failing test

* rephrase comment

* simplify storepath creation

* Update tests/v3/test_api.py

Co-authored-by: Joe Hamman <[email protected]>

* refactor: remove redundant zarr format fixture

* replace assertion with an informative error message

* fix incorrect path concatenation in make_store_path, and refactor store_path tests

* remove upath import because we don't need it

* apply suggestions from code review

---------

Co-authored-by: Joe Hamman <[email protected]>

* Enforce ruff/flake8-pyi rule PYI013 (#2389)

PYI013 Non-empty class body must not contain `...`

Note that documentation is enough to fill the class body.

* deps: remove fasteners from list of dependencies (#2386)

* Enforce ruff/flake8-annotations rule ANN003 (#2388)

ANN003 Missing type annotation

Co-authored-by: Joe Hamman <[email protected]>

* Enforce ruff/Perflint rules (PERF) (#2372)

* Apply ruff/Perflint rule PERF401

PERF401 Use a list comprehension to create a transformed list

* Enforce ruff/Perflint rules (PERF)

* chore: update package maintainers (#2387)

* chore: update package maintainers

* Update pyproject.toml

Co-authored-by: David Stansby <[email protected]>

---------

Co-authored-by: David Stansby <[email protected]>

* Fixed consolidated Group getitem with multi-part key (#2363)

* Fixed consolidated Group getitem with multi-part key

This fixes `Group.__getitem__` when indexing with a key
like 'subgroup/array'. The basic idea is to rewrite the indexing
operation as `group['subgroup']['array']` by splitting the key
and doing each operation independently.

Closes #2358

---------

Co-authored-by: Joe Hamman <[email protected]>

* chore: add python 3.13 to ci / pyproject.toml (#2385)

* chore: add python 3.13 to ci / pyproject.toml

* update hatch matrix

* remove references to dead test dir in pyproject.toml

* remove v3 reference in test

---------

Co-authored-by: Joe Hamman <[email protected]>
Co-authored-by: Dimitri Papadopoulos Orfanos <[email protected]>
Co-authored-by: Emma Marshall <[email protected]>
Co-authored-by: Sanket Verma <[email protected]>
Co-authored-by: David Stansby <[email protected]>
Co-authored-by: Tom Augspurger <[email protected]>

Author: 7 people

pyproject.toml

@@ -153,7 +153,7 @@ run-coverage-gpu = "pip install cupy-cuda12x && pytest -m gpu --cov-config=pypro
 run = "run-coverage --no-cov"
 run-verbose = "run-coverage --verbose"
 run-mypy = "mypy src"
-run-hypothesis = "pytest --hypothesis-profile ci tests/v3/test_properties.py tests/v3/test_store/test_stateful*"
+run-hypothesis = "pytest --hypothesis-profile ci tests/test_properties.py tests/test_store/test_stateful*"
 list-env = "pip list"
 
 [tool.hatch.envs.gputest]
@@ -173,7 +173,7 @@ run-coverage = "pytest -m gpu --cov-config=pyproject.toml --cov=pkg --cov=tests"
 run = "run-coverage --no-cov"
 run-verbose = "run-coverage --verbose"
 run-mypy = "mypy src"
-run-hypothesis = "pytest --hypothesis-profile ci tests/v3/test_properties.py tests/v3/test_store/test_stateful*"
+run-hypothesis = "pytest --hypothesis-profile ci tests/test_properties.py tests/test_store/test_stateful*"
 list-env = "pip list"
 
 [tool.hatch.envs.docs]
@@ -282,18 +282,17 @@ ignore_errors = true
 
 [[tool.mypy.overrides]]
 module = [
-    "tests.v2.*",
-    "tests.v3.package_with_entrypoint.*",
-    "tests.v3.test_codecs.test_codecs",
-    "tests.v3.test_codecs.test_transpose",
-    "tests.v3.test_metadata.*",
-    "tests.v3.test_store.*",
-    "tests.v3.test_config",
-    "tests.v3.test_group",
-    "tests.v3.test_indexing",
-    "tests.v3.test_properties",
-    "tests.v3.test_sync",
-    "tests.v3.test_v2",
+    "tests.package_with_entrypoint.*",
+    "tests.test_codecs.test_codecs",
+    "tests.test_codecs.test_transpose",
+    "tests.test_metadata.*",
+    "tests.test_store.*",
+    "tests.test_config",
+    "tests.test_group",
+    "tests.test_indexing",
+    "tests.test_properties",
+    "tests.test_sync",
+    "tests.test_v2",
 ]
 ignore_errors = true
 

src/zarr/testing/utils.py

@@ -1,6 +1,7 @@
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any, cast
+from collections.abc import Callable, Coroutine
+from typing import TYPE_CHECKING, Any, TypeVar, cast
 
 import pytest
 
@@ -37,8 +38,16 @@ def has_cupy() -> bool:
         return False
 
 
+T_Callable = TypeVar("T_Callable", bound=Callable[[], Coroutine[Any, Any, None]])
+
+
 # Decorator for GPU tests
-def gpu_test(func: Any) -> Any:
-    return pytest.mark.gpu(
-        pytest.mark.skipif(not has_cupy(), reason="CuPy not installed or no GPU available")(func)
+def gpu_test(func: T_Callable) -> T_Callable:
+    return cast(
+        T_Callable,
+        pytest.mark.gpu(
+            pytest.mark.skipif(not has_cupy(), reason="CuPy not installed or no GPU available")(
+                func
+            )
+        ),
     )