first commit

Author: zhizhi10

.gitignore

@@ -0,0 +1 @@
+__pycache__

Dockerfile

@@ -0,0 +1,14 @@
+FROM python:3.8-slim-bullseye
+
+
+
+# Install Stardist and tensorflow and its dependencies
+COPY requirements.txt /tmp/
+RUN pip3 install -r /tmp/requirements.txt
+
+# --------------------------------------------------------------------------------------------
+# Install scripts
+COPY descriptor.json /app/descriptor.json
+COPY run.py /app/run.py
+
+ENTRYPOINT ["python3", "/app/run.py"]

cytomine/__init__.py

@@ -0,0 +1,22 @@
+# -*- coding: utf-8 -*-
+
+# * Copyright (c) 2009-2022. Authors: see NOTICE file.
+# *
+# * Licensed under the Apache License, Version 2.0 (the "License");
+# * you may not use this file except in compliance with the License.
+# * You may obtain a copy of the License at
+# *
+# *      http://www.apache.org/licenses/LICENSE-2.0
+# *
+# * Unless required by applicable law or agreed to in writing, software
+# * distributed under the License is distributed on an "AS IS" BASIS,
+# * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# * See the License for the specific language governing permissions and
+# * limitations under the License.
+
+__author__ = "Rubens Ulysse <urubens@uliege.be>"
+__contributors__ = ["Marée Raphaël <raphael.maree@uliege.be>", "Mormont Romain <r.mormont@uliege.be>"]
+__copyright__ = "Copyright 2010-2022 University of Liège, Belgium, http://www.cytomine.be/"
+
+from .cytomine import Cytomine
+from .cytomine_job import CytomineJob, CytomineJobLogger, CytomineJobProgressMonitor