Importing from tests.x

[kellerza]

I get this over most of my test infra.

from tests.conftest import MongoMockEnv

error: Cannot find implementation or library stub for module named "tests.conftest"  [import-not-found]

Tests is not a full module in pyproject

[tool.uv]
build-backend.module-name = ["mymodule"]

I tried to add a tests\py.typed. No luck

What seems to work is relative imports:

from ...conftest import MongoMockEnv

[davidhalter]

Can you show me your directory structure?

On Linux you could do it like this for example:

tree -L 2

This is obviously a problem with the sys path. And while I could show you how to work around it, I'd be happier to fix it.

[marovira]

I have the exact same problem, though my setup is a bit different.
Here's my tree layout:

.
├── fd
│   ├── __init__.py
│   ├── config.py
│   ├── data
│   ├── models
│   ├── networks
│   └── py.typed
├── test.py
└── train.py

In test.py, I have the following import:

from fd import config

Which results in this error:

test.py:9: error: Cannot find implementation or library stub for module named "fd"  [import-not-found]

Adding a py.typed to fd does not resolve this issue.
If I switch the import to this:

from .fd import config

Then zuban no longer emits an error, but mypy does:

test.py:11: error: Cannot find implementation or library stub for module named ".fd"  [import-not-found]
test.py:11: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports

[davidhalter]

@marovira Is there an outer (parent) directory with a .git, pyproject.toml, setup.py, etc? Which operating system are you using?

This definitely works for me, and it should! So if this is not some weirder issue with your setup, this is pretty much the highest priority for me. The sys path does not seem to get picked up right.

Ideally you run ZUBAN_LOG=debug ZUBAN_LOG_FILE=../zuban.log zuban check once to give me more information about that.

[marovira]

@davidhalter

@marovira Is there an outer (parent) directory with a .git, pyproject.toml, setup.py, etc?

Here's the full project tree:

.
├── .git
├── .gitignore
├── .gitlint
├── .mypy_cache
├── .pre-commit-config.yaml
├── .python-version
├── .ruff_cache
├── .venv
├── pyproject.toml
├── python
│   ├── .mypy_cache
│   ├── fd
│   ├── test.py
│   └── train.py
└── uv.lock

Which operating system are you using?

The initial report was tested on Windows, but I've since verified that the issue occurs on both Windows and Linux.

Ideally you run ZUBAN_LOG=debug ZUBAN_LOG_FILE=../zuban.log zuban check once to give me more information about that.

Here's the log output on running ZUBAN_LOG=debug ZUBAN_LOG_FILE=../zuban.log zuban check python:

2026-02-18T06:51:33.74592134-08:00  INFO Zuban version 0.5.1
2026-02-18T06:51:33.745938579-08:00  INFO Checking in /home/marovira/Documents/face_detection
2026-02-18T06:51:33.745958859-08:00  INFO Potential config found: /home/marovira/Documents/face_detection/pyproject.toml
2026-02-18T06:51:33.746031272-08:00  WARN TODO ignored config value warn_unused_configs
2026-02-18T06:51:33.746034221-08:00  WARN Ignored config value warn_unused_ignores, please contact support if you need them
2026-02-18T06:51:33.746039579-08:00  WARN Unsupported option given in Mypy config: overrides =  [
    { module = "torchvision.*", ignore_missing_imports = true },
    { module = "dlib.*", ignore_missing_imports = true },
], contact support if you need it
2026-02-18T06:51:33.746052637-08:00  INFO Checking the following environment: /home/marovira/Documents/face_detection/.venv
2026-02-18T06:51:33.746061915-08:00  INFO Checking the following files: [GlobAbsPath { pattern: Pattern { original: "/home/marovira/Documents/face_detection/python", tokens: [Char('/'), Char('h'), Char('o'), Char('m'), Char('e'), Char('/'), Char('m'), Char('a'), Char('r'), Char('o'), Char('v'), Char('i'), Char('r'), Char('a'), Char('/'), Char('D'), Char('o'), Char('c'), Char('u'), Char('m'), Char('e'), Char('n'), Char('t'), Char('s'), Char('/'), Char('f'), Char('a'), Char('c'), Char('e'), Char('_'), Char('d'), Char('e'), Char('t'), Char('e'), Char('c'), Char('t'), Char('i'), Char('o'), Char('n'), Char('/'), Char('p'), Char('y'), Char('t'), Char('h'), Char('o'), Char('n')], is_recursive: false, has_metachars: false } }]
2026-02-18T06:51:33.746067262-08:00  INFO Found the following excludes: []
2026-02-18T06:51:33.746128672-08:00 DEBUG Wanted to list lib dir "/usr/bin/lib", but got: Os { code: 2, kind: NotFound, message: "No such file or directory" }
2026-02-18T06:51:33.746218597-08:00 DEBUG Found "/usr/lib/python3.12/os.py" -> choosing /usr/lib/python3.12 as the library path
2026-02-18T06:51:33.746221237-08:00  INFO Decided to use /usr/lib/python3.12 as the Python lib folder
2026-02-18T06:51:33.746286984-08:00 DEBUG Add workspace /home/marovira/Documents/face_detection
2026-02-18T06:51:33.74630529-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.gitignore
2026-02-18T06:51:33.746472395-08:00 DEBUG Add workspace /home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib
2026-02-18T06:51:33.746636248-08:00 DEBUG Add workspace /home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stubs/mypy-extensions
2026-02-18T06:51:33.746660104-08:00 DEBUG Add workspace /usr/lib/python3.12
2026-02-18T06:51:33.746758386-08:00 DEBUG Add workspace /home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages
2026-02-18T06:51:33.746921755-08:00  INFO Found .pth file: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/coloredlogs.pth
2026-02-18T06:51:33.746925923-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/coloredlogs.pth
2026-02-18T06:51:33.747046051-08:00  INFO Found .pth file: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/distutils-precedence.pth
2026-02-18T06:51:33.747048662-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/distutils-precedence.pth
2026-02-18T06:51:33.747056111-08:00  INFO Found .pth file: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/_virtualenv.pth
2026-02-18T06:51:33.747057573-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/_virtualenv.pth
2026-02-18T06:51:33.747066814-08:00 DEBUG Add workspace 
2026-02-18T06:51:33.747911155-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/builtins.pyi
2026-02-18T06:51:33.747913034-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/types.pyi
2026-02-18T06:51:33.747916857-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/enum.pyi
2026-02-18T06:51:33.747924048-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/typing.pyi
2026-02-18T06:51:33.747924883-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/abc.pyi
2026-02-18T06:51:33.747925613-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/functools.pyi
2026-02-18T06:51:33.74794222-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/_typeshed/__init__.pyi
2026-02-18T06:51:33.747952519-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/dataclasses.pyi
2026-02-18T06:51:33.74795252-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stubs/mypy-extensions/mypy_extensions.pyi
2026-02-18T06:51:33.747961707-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/_collections_abc.pyi
2026-02-18T06:51:33.747957925-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/warnings.pyi
2026-02-18T06:51:33.747971836-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/collections/__init__.pyi
2026-02-18T06:51:33.747974968-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/typing_extensions.pyi
2026-02-18T06:51:33.774207342-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/collections/abc.pyi
2026-02-18T06:51:33.775011976-08:00 DEBUG Project settings: PythonProject {
    sys_path: [
        (
            PythonStdLib,
            NormalizedPath(
                AbsPath(
                    "/usr/lib/python3.12",
                ),
            ),
        ),
        (
            SitePackages,
            NormalizedPath(
                AbsPath(
                    "/home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages",
                ),
            ),
        ),
    ],
    settings: Settings {
        platform: None,
        python_version: None,
        environment: Some(
            NormalizedPath(
                AbsPath(
                    "/home/marovira/Documents/face_detection/.venv",
                ),
            ),
        ),
        mypy_path: [
            NormalizedPath(
                AbsPath(
                    "/home/marovira/Documents/face_detection",
                ),
            ),
        ],
        prepended_site_packages: [],
        add_global_packages_default: true,
        mode: Mypy,
        untyped_function_return_mode: Any,
        exclude_gitignore: false,
        files_or_directories_to_check: [
            GlobAbsPath {
                pattern: Pattern {
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                    tokens: [
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                    ],
                    is_recursive: false,
                    has_metachars: false,
                },
            },
        ],
        typeshed_path: None,
    },
    flags: FinalizedTypeCheckerFlags(
        TypeCheckerFlags {
            ignore_errors: false,
            strict_optional: true,
            strict_equality: false,
            implicit_optional: false,
            check_untyped_defs: false,
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            follow_untyped_imports: false,
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            enabled_error_codes: [],
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            always_true_symbols: [],
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            extra_checks: false,
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            untyped_strict_optional: true,
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    overrides: [],
}
2026-02-18T06:51:33.775207766-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/test.py
2026-02-18T06:51:33.775289601-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/__init__.py
2026-02-18T06:51:33.775292731-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/networks/opencv_ssd.py
2026-02-18T06:51:33.775295745-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/networks/dlib_hog.py
2026-02-18T06:51:33.7753053-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/models/__init__.py
2026-02-18T06:51:33.775305298-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/data/__init__.py
2026-02-18T06:51:33.775307033-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/config.py
2026-02-18T06:51:33.775305964-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/models/test_model.py
2026-02-18T06:51:33.775308155-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/data/datasets/common.py
2026-02-18T06:51:33.775307269-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/data/datasets/test.py
2026-02-18T06:51:33.775307883-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/data/datasets/__init__.py
2026-02-18T06:51:33.775307254-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/fd/networks/__init__.py
2026-02-18T06:51:33.775315248-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/python/train.py
2026-02-18T06:51:33.775694211-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/pathlib/__init__.pyi
2026-02-18T06:51:33.775703795-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/utils/data/__init__.py
2026-02-18T06:51:33.775726365-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/data/__init__.py
2026-02-18T06:51:33.775995742-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/nn/__init__.py
2026-02-18T06:51:33.776023829-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/__init__.py
2026-02-18T06:51:33.776028931-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/data/functional.py
2026-02-18T06:51:33.776031605-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/__init__.py
2026-02-18T06:51:33.776109453-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/argparse.pyi
2026-02-18T06:51:33.776110998-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/core/cuda.py
2026-02-18T06:51:33.776114966-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/cv2/__init__.pyi
2026-02-18T06:51:33.776119546-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/trainer.py
2026-02-18T06:51:33.776119068-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/core/__init__.py
2026-02-18T06:51:33.776119069-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/model/__init__.py
2026-02-18T06:51:33.776489072-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/tomllib.pyi
2026-02-18T06:51:33.77657075-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/numpy/__init__.pyi
2026-02-18T06:51:33.776581073-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/data/transforms.py
2026-02-18T06:51:33.776611539-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/json/__init__.pyi
2026-02-18T06:51:33.778112115-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/modules/utils.py
2026-02-18T06:51:33.778122692-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torchmetrics/detection/__init__.py
2026-02-18T06:51:33.778148634-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torchmetrics/__init__.py
2026-02-18T06:51:33.804257846-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/zuban/third_party/typeshed/stdlib/os/__init__.pyi
2026-02-18T06:51:33.808919685-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/core/utils.py
2026-02-18T06:51:33.809553041-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/model/utils.py
2026-02-18T06:51:33.809653926-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/model/model.py
2026-02-18T06:51:33.810386346-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/__init__.py
2026-02-18T06:51:33.810421573-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/data/datamodule.py
2026-02-18T06:51:33.811192707-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/modules/__init__.py
2026-02-18T06:51:33.811581788-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/modules/module.py
2026-02-18T06:51:33.816723638-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/nn/utils.py
2026-02-18T06:51:33.817022381-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/init.py
2026-02-18T06:51:33.818182462-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/nn/modules/batchnorm.py
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2026-02-18T06:51:35.002519928-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torchmetrics/metric.py
2026-02-18T06:51:35.005875988-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/core/distributed.py
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2026-02-18T06:51:35.008934271-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/core/logging.py
2026-02-18T06:51:35.011750972-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/helios/_version.py
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2026-02-18T06:51:35.021935176-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/utils/data/dataloader.py
2026-02-18T06:51:35.025000905-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/utils/data/_utils/__init__.py
2026-02-18T06:51:35.025070334-08:00 DEBUG Read from FS: file:///home/marovira/Documents/face_detection/.venv/lib/python3.12/site-packages/torch/utils/data/_utils/collate.py
2026-02-18T06:51:35.033191217-08:00  INFO Checked 13 files (1 files had errors)

[davidhalter]

Hmm what is the content of pyproject.toml in your case? I'm not sure how Python in this case would get the correct sys path. How would you run the tests with/without uv?

[kellerza]

uv refers to these as packaged applications or libraries - a src layout

├── src
│   ├── myproj
│   │  ├── __init__.py
│   │  ├── main.py
│   ├── tests
│   │  ├── __init__.py
│   │  ├── conftest.py
│   │  └── test_main.py
│   └── 
├── 
└── pyproject.toml

https://docs.astral.sh/uv/concepts/projects/init/#packaged-applications
https://docs.astral.sh/uv/concepts/projects/init/#libraries

[marovira]

Hmm what is the content of pyproject.toml in your case?

Here's the pyproject.toml:

[project]
name = "face_detection"
description = ""
readme = "README.md"
requires-python = ">=3.12,<3.13"
dependencies = [
    "dlib==20.0.0",
    "faster-coco-eval==1.7.1",
    "helios-ml==1.4.0",
    "httpx==0.28.1",
    "joblib-stubs==1.5.3.1.20260117",
    "mypy==1.19.1",
    "onnxruntime==1.23.2",
    "pre-commit==4.5.1",
    "ruff==0.14.13",
    "scipy==1.17.0",
    "scipy-stubs==1.17.0.2",
    "tensorboard==2.20.0",
    "torch==2.9.1",
    "torchmetrics==1.8.2",
    "torchvision==0.24.1",
    "types-tqdm==4.67.0.20250809",
    "zuban>=0.5.1",
]
dynamic = [
    "version",
]

[tool.uv]
required-version = ">=0.9"
package = false
index = [
    { name = "torch-cu128", url = "https://download.pytorch.org/whl/cu128", explicit = true },
    { name = "torch-cpu", url = "https://download.pytorch.org/whl/cpu", explicit = true },
]

[tool.uv.sources]
din = [
    { git = "ssh://git@gitlab.acdsee.com/rd/sdk/din.git", tag = "0.2.0" },
]
torch = [
    { index = "torch-cu128", marker = "sys_platform != 'darwin'" },
    { index = "torch-cpu", marker = "sys_platform == 'darwin'" },
]
torchvision = [
    { index = "torch-cu128", marker = "sys_platform != 'darwin'" },
    { index = "torch-cpu", marker = "sys_platform == 'darwin'" },
]

[tool.mypy]
warn_unused_configs = true
warn_unused_ignores = true
overrides = [
    { module = "torchvision.*", ignore_missing_imports = true },
    { module = "dlib.*", ignore_missing_imports = true },
]

[tool.ruff]
line-length = 90
indent-width = 4
src = [
    "python",
    "tools",
]

[tool.ruff.lint]
select = [
    "A",
    "B",
    "C4",
    "E",
    "ERA",
    "F",
    "I",
    "ICN",
    "N",
    "NPY",
    "PIE",
    "PLR0402",
    "PTH",
    "RUF100",
    "SIM",
    "SLF",
    "T10",
    "UP",
]
ignore = [
    "N801",
    "N802",
    "N803",
    "N806",
    "N812",
]
fixable = [
    "I",
]
extend-safe-fixes = []
unfixable = []

[tool.ruff.format]
line-ending = "lf"

How would you run the tests with/without uv?

In my case there are no tests, I just run the files directly under the python folder like this:

• With uv: uv run python/test.py
• Without uv: python python/test.py after activating the virtual environment.

Edit:
What @kellerza mentioned about uv's packaged applications does not apply to my case. Since I'm setting tool.uv.package = false, uv won't install the package into the workspace directly as explained here

[davidhalter]

I just fixed a big bug around nested sys paths, this affected all typical uv installations. If you guys want to check if this is fixed for you, you have to use master branch. Otherwise I will remind you again once the release is out. The relevant fixed issue is #301.

[davidhalter]

Please retry and report back if this is still an issue 0.6.1

[marovira]

To update on my side: issue #301 is no longer a problem. For this current issue however, I'm still getting the stub error from zuban:

python\test.py:9: error: Cannot find implementation or library stub for module named "fd"  [import-not-found]
python\test.py:10: error: Cannot find implementation or library stub for module named "fd"  [import-not-found]

I have attached the debug log for reference

zuban.log

[davidhalter]

@marovira Is this reproducible with a very simple setup? I.e. just a dependency like requests and a very simple pyproject.toml? That would make it easier to reproduce and work on this.

I'm also aware that uv run has problems with the paths (see also #21), is this the same issue? Or does it also happen if you run zuban directly? I have tried your latest helios-ml release, but there's no python folder there.

[marovira]

@marovira Is this reproducible with a very simple setup? I.e. just a dependency like requests and a very simple pyproject.toml? That would make it easier to reproduce and work on this.

Yes it is. See below for the repro instructions.

I'm also aware that uv run has problems with the paths (see also #21), is this the same issue? Or does it also happen if you run zuban directly?

It doesn't appear to be. I can reproduce it both by:

• Activating the virtual environment and running zuban check directly, or
• Running uv run zuban check

I have tried your latest helios-ml release, but there's no python folder there.

The problem in this issue appears in an internal project that I can't share, so helios won't be of any help here. See below for a minimal example.

Minimal Reproducible Example

Create an empty folder called repro and reproduce the following layout:

.
├── .python-version
├── pyproject.toml
└── python
    ├── example
    │   ├── __init__.py
    │   └── util.py
    └── run.py

Here are the contents of each file:
.python-version:

3.13

Note

The exact python version isn't important. I've been able to reproduce it with 3.12, 3.13, and 3.14

pyproject.toml:

[project]
name = "repro"
description = ""
requires-python = ">=3.13"
dependencies = [
    "zuban>=0.6.1",
]
dynamic = ["version"]

[tool.uv]
required-version = ">=0.9"
package = false

[tool.mypy]
warn_unused_configs = true
warn_unused_ignores = true

util.py:

def add(x: int, y: int) -> int:
    return x + y

run.py:

from example import util

res = util.add(1, 2)
print(res)

Leave __init__.py empty.

Once the files are created, run uv run python/run.py to make sure the environment is created and everything runs correctly. The only output from the code itself should be 3.

Now run any of:

• uv run zuban check python
• zuban check python (activate the virtual environment first)
  See that in both cases, Zuban produces the following error message:

python\run.py:1: error: Cannot find implementation or library stub for module named "example"  [import-not-found]
Found 1 error in 1 file (checked 3 source files)

To complete the test, add an empty py.typed file under python/example and re-run any of the Zuban commands. See that the error does not go away.

[davidhalter]

Thanks a lot! That helps a lot. I am however very confused why

$ uv run python/run.py  # Works
3
$ uv run python python/run.py  # Also works
3
$ uv run python -c 'import example'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
    import example
ModuleNotFoundError: No module named 'example'

It seems like uv is doing some "magic" for the sys path that I don't understand yet.

PS: py.typed does not and should not change anything IMO. This is a working directory not a dependency and is therefore imported anyway. I guess type checkers could check for this, I'm not aware of all the details of the PEP, but zuban only checks for this file in dependencies (and by default it doesn't even really have a function anymore if you use zuban check, but it does with zuban mypy).

[davidhalter]

I realized that this is also the case without uv. I really really thought that python/run.py would not set the python dir as a sys path.

The problem is essentially that even without uv, the sys path has to be found. I could do better heuristics, but in this specific case we kind of have to guess, because no type checker know that you are going to run python/run.py. This is only obvious to the engineer and not the tools. But I will have to dig in a bit.