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#--- GA_metajob.sh -a script that sets up the GA simulations and then submits them.
# ---last updated on Sun Apr 27 14:57:27 CEST 2014 by ga79moz at location TUM , lagrange2
#---------------------------------------------------------------------------------------------------------------------------
NGtype="HNG" #----- command line.
#--------------------------------
kS_N=0.0
kA_N=1.0
kS_TF=0.0
kA_TF=1.0
Llim="100"
t0="0.0000000001"
tf="800"
t_trans=100.0
dt_obs=1.0
dtau_plot=0.1
max_tcorr=1;
a="2"
mu_TF=0.0
krm_b=0
krm_val="0.0"
should_plot_snapshots=0
Nplots2makeshort=0
Nplots2makelong=0
should_plot_kymo=0
Nplots2make_kymo=0
BZcond="boltzmann_on_add"
BZalpha=1.0
parity_check="88885888"
num_trials=100
output_subfolder="muN_scan"
#run_time="72:59:0"
run_time="1:59:0"
# ------------------pathout="./"
# ----- we don't specify path_out here. path_out="./"
job_sub_script=GA_Hard_Dimers_muscan.sh
WORKDIR=./GA_output_on_space/job_GA_hard_dimers_muscan_a-${a}_L-${Llim}_N-${num_trials}_output-${NGtype}/
#----------------------------------------------------------------------------------------
eps_array_file="/home/t30/ger/ga79moz/grad_research_phd/project/Nucl/scan_space_eps_muN/array_eps_a"${a}".txt"
muN_array_file="/home/t30/ger/ga79moz/grad_research_phd/project/Nucl/scan_space_eps_muN/array_muN_a"${a}".txt"
#---- FOR THE THERMO-SCANS WE USE A SPECIFIC FILE SET
# eps_array_file="/home/t30/ger/ga79moz/grad_research_phd/project/Nucl/scan_space_eps_muN/array_eps_a"${a}"_THERMO.txt"
# muN_array_file="/home/t30/ger/ga79moz/grad_research_phd/project/Nucl/scan_space_eps_muN/array_muN_a"${a}"_THERMO.txt"
if [ -f ${eps_array_file} ];
then
echo "reading epsilon array from file ${eps_array_file} exists."
else
echo "ERROR: File ${eps_array_file} does not exist. Exiting"
exit
fi
if [ -f ${muN_array_file} ];
then
echo "reading epsilon array from file ${muN_array_file} exists."
else
echo "ERROR: File ${muN_array_file} does not exist. Exiting"
exit
fi
num_eps=$(cat $eps_array_file |wc -l)
num_mus=$(cat $muN_array_file |wc -l)
num_tasks=$(( ${num_eps}*${num_mus} ))
echo "num_eps=" ${num_eps} ", num_mus=" ${num_mus}
echo "preparing to submit num_tasks=" ${num_tasks}
#-----------------SET UP THE C++ INPUT FILE ---------------------------
echo $kS_N $kA_N $kS_TF $kA_TF > GA_GC_NTF.in
echo $Llim >> GA_GC_NTF.in
echo $t0 $tf $t_trans $dt_obs $dtau_plot $max_tcorr >> GA_GC_NTF.in
echo $a >> GA_GC_NTF.in
echo $mu_TF >> GA_GC_NTF.in
echo "" >> GA_GC_NTF.in
echo $krm_b $krm_val >> GA_GC_NTF.in
echo $should_plot_snapshots $Nplots2makeshort $Nplots2makelong >> GA_GC_NTF.in
echo $should_plot_kymo $Nplots2make_kymo >> GA_GC_NTF.in
echo $BZcond $BZalpha >> GA_GC_NTF.in
echo "" >> GA_GC_NTF.in
echo $output_subfolder >> GA_GC_NTF.in
echo $parity_check >> GA_GC_NTF.in
echo $num_trials >> GA_GC_NTF.in
# ------echo $pathout >> GA_GC_NTF.in
#---------------------------------------------------------------------
# create a local directory for this job only
if [ ! -e $WORKDIR ]; then
mkdir -p $WORKDIR
else
# this should never happen
# echo "Clean up /data/$USER/ directory on $HOSTNAME"
# | mail -s "SGE-error" $USER
exit 1
fi
# create a local copy of the program and start the job
OLDDIR=`pwd`
#---------COPY NECESSARY FILES OVER TO THE WORK DIRECTORY-------
cp GA_GC_NTF.x ${WORKDIR}/
cp GA_GC_NTF.in ${WORKDIR}/
echo $RANDOM > ${WORKDIR}/rngSEED.in
#----------------- NOW BUILD THE SCRIPT FILE -----------------
echo "#!/bin/bash" > ${WORKDIR}${job_sub_script}
echo "#$ -S /bin/sh" >> ${WORKDIR}${job_sub_script}
echo "#$ -cwd" >> ${WORKDIR}${job_sub_script}
# echo "#$ -m eas" >> ${WORKDIR}${job_sub_script}
echo "#$ -l h_vmem=500M,s_rt=${run_time}" >> ${WORKDIR}${job_sub_script}
echo "#$ -t 1-"${num_tasks} >> ${WORKDIR}${job_sub_script}
# echo "#$ -q lagrange" >> ${WORKDIR}${job_sub_script}
echo "" >> ${WORKDIR}${job_sub_script}
echo "#-----------------------------" >> ${WORKDIR}${job_sub_script}
echo "" >> ${WORKDIR}${job_sub_script}
echo "" >> ${WORKDIR}${job_sub_script}
echo "NGtype=\""${NGtype}"\"" >> ${WORKDIR}${job_sub_script}
echo "eps_array_file="${eps_array_file} >> ${WORKDIR}${job_sub_script}
echo "muN_array_file="${muN_array_file} >> ${WORKDIR}${job_sub_script}
echo "num_tasks="${num_tasks} >> ${WORKDIR}${job_sub_script}
echo "num_eps="${num_eps} >> ${WORKDIR}${job_sub_script}
echo "num_mus="${num_mus} >> ${WORKDIR}${job_sub_script}
cat GA_jobsub_tail.sh >> ${WORKDIR}${job_sub_script}
#-----------GO TO THE WORK DIRECTORY AND EXECUTE ----------------
cd $WORKDIR
# qsub ${job_sub_script}
#--------------------------------------------