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diatomsRcooldiatomsRcool
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20220309 release
1 parent 52492a1 commit e85510b

12 files changed

Lines changed: 373105 additions & 51214 deletions

‎src/ontology/ecocore-edit.owl‎

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -18,6 +18,7 @@ Import(<http://purl.obolibrary.org/obo/ecocore/imports/pco_import.owl>)
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Import(<http://purl.obolibrary.org/obo/ecocore/imports/po_import.owl>)
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Import(<http://purl.obolibrary.org/obo/ecocore/imports/ro_import.owl>)
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Import(<http://purl.obolibrary.org/obo/ecocore/imports/uberon_import.owl>)
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Annotation(<http://purl.org/dc/terms/license> <https://creativecommons.org/licenses/by/3.0/>)
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Annotation(rdfs:comment "An ontology of core ecological entities")
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Declaration(Class(<http://purl.obolibrary.org/obo/CARO_0010004>))
@@ -203,6 +204,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ECOCORE_00000182>))
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Declaration(Class(<http://purl.obolibrary.org/obo/ECOCORE_3000001>))
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Declaration(Class(<http://purl.obolibrary.org/obo/ecocore_00000082>))
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Declaration(Class(<http://purl.obolibrary.org/obo/ecocore_00000133>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
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############################
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# Annotation Properties
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############################
@@ -959,8 +961,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/ECOCORE_00000091> <http://purl.obolib
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# Class: <http://purl.obolibrary.org/obo/ECOCORE_00000092> (secondary consumer)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ECOCORE_00000092> "A predator that eats primary consumers or herbivores")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ECOCORE_00000092> "http://orcid.org/0000-0002-2908-3327")
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ECOCORE_00000092> "A predator that eats primary consumers or herbivores")
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ECOCORE_00000092> "secondary consumer")
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SubClassOf(<http://purl.obolibrary.org/obo/ECOCORE_00000092> <http://purl.obolibrary.org/obo/ECOCORE_00000089>)
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@@ -1167,7 +1169,6 @@ SubClassOf(<http://purl.obolibrary.org/obo/ECOCORE_00000119> <http://purl.obolib
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# Class: <http://purl.obolibrary.org/obo/ECOCORE_00000120> (sequentially hermaphroditic)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ECOCORE_00000120> "Sequential hermaphroditism occurs when the individual changes sex at some point in its life.")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ECOCORE_00000120> "a reproductive quality inhering in the bearer by virtue of the bearer changing sex at some point in its life")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ECOCORE_00000120> "http://orcid.org/0000-0002-2908-3327")
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AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ECOCORE_00000120> "dichogamy")

‎src/ontology/imports/bfo_import.owl‎

Lines changed: 10 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -7,11 +7,12 @@
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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:xml="http://www.w3.org/XML/1998/namespace"
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:terms="http://purl.org/dc/terms/">
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<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ecocore/imports/bfo_import.owl">
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ecocore/releases/2021-02-17/imports/bfo_import.owl"/>
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ecocore/releases/2022-03-09/imports/bfo_import.owl"/>
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<dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
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<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-02-17</owl:versionInfo>
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<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-03-09</owl:versionInfo>
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</owl:Ontology>
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@@ -129,6 +130,12 @@
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<!-- http://purl.org/dc/terms/license -->
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<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
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<!--
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///////////////////////////////////////////////////////////////////////////////////////
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//

‎src/ontology/imports/chebi_import.owl‎

Lines changed: 31 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -12,8 +12,8 @@
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xmlns:chebi2="http://purl.obolibrary.org/obo/chebi#1"
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xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
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<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ecocore/imports/chebi_import.owl">
15-
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ecocore/releases/2021-02-17/imports/chebi_import.owl"/>
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<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-02-17</owl:versionInfo>
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ecocore/releases/2022-03-09/imports/chebi_import.owl"/>
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<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-03-09</owl:versionInfo>
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</owl:Ontology>
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@@ -1419,6 +1419,7 @@
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<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
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<oboInOwl:hasRelatedSynonym>Kohlenhydrat</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>Kohlenhydrate</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>a carbohydrate</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>carbohidrato</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>carbohidratos</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>glucide</oboInOwl:hasRelatedSynonym>
@@ -1459,6 +1460,12 @@
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<owl:annotatedTarget>Kohlenhydrate</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_16646"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
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<owl:annotatedTarget>a carbohydrate</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UniProt</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_16646"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
@@ -3581,6 +3588,12 @@
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<owl:annotatedTarget>Mg</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_25107"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
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<owl:annotatedTarget>Mg</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UniProt</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_25107"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
@@ -8928,8 +8941,8 @@
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
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<obo:IAO_0000115>An enzyme inhibitor that interferes with the activity of cytochrome P450 involved in catalysis of organic substances.</obo:IAO_0000115>
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<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
8931-
<oboInOwl:hasRelatedSynonym>CYP2D6 inhbitor</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>CYP2D6 inhbitors</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>CYP2D6 inhibitor</oboInOwl:hasRelatedSynonym>
8945+
<oboInOwl:hasRelatedSynonym>CYP2D6 inhibitors</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>P450 inhibitors</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>cytochrome P450 inhibitor</oboInOwl:hasRelatedSynonym>
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<oboInOwl:hasRelatedSynonym>cytochrome P450 inhibitors</oboInOwl:hasRelatedSynonym>
@@ -8940,13 +8953,13 @@
89408953
<owl:Axiom>
89418954
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_50183"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
8943-
<owl:annotatedTarget>CYP2D6 inhbitor</owl:annotatedTarget>
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<owl:annotatedTarget>CYP2D6 inhibitor</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_50183"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
8949-
<owl:annotatedTarget>CYP2D6 inhbitors</owl:annotatedTarget>
8962+
<owl:annotatedTarget>CYP2D6 inhibitors</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
@@ -10507,6 +10520,18 @@
1050710520
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
1050810521
<rdfs:label>EC 1.14.14.1 (unspecific monooxygenase) inhibitor</rdfs:label>
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</owl:Class>
10523+
<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
10526+
<owl:annotatedTarget>aryl-4-monooxygenase inhibitors</owl:annotatedTarget>
10527+
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
10532+
<owl:annotatedTarget>flavoprotein monooxygenase inhibitor</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
1051110536
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
@@ -10633,18 +10658,6 @@
1063310658
<owl:annotatedTarget>aryl-4-monooxygenase inhibitor</owl:annotatedTarget>
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<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
10637-
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
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<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
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<owl:annotatedTarget>aryl-4-monooxygenase inhibitors</owl:annotatedTarget>
10640-
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
10641-
</owl:Axiom>
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<owl:Axiom>
10643-
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_76898"/>
10644-
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
10645-
<owl:annotatedTarget>flavoprotein monooxygenase inhibitor</owl:annotatedTarget>
10646-
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
10647-
</owl:Axiom>
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1064910662

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