BeetleFlow/.zenodo.json at main · Imageomics/BeetleFlow · GitHub

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{
  "creators": [
    {
      "name": "Liu, Fangxun",
      "affiliation": "The Ohio State University",
      "orcid": "0009-0008-8508-2776"
    },
    {
      "name": "Rayeed, S M",
      "affiliation": "Rensselaer Polytechnic Institute"
    },
    {
      "name": "Stevens, Samuel",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "East, Alyson",
      "affiliation": "The University of Maine"
    },
    {
      "name": "Chiang, Cheng Hsuan",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Lee, Colin",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Yi, Daniel",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Yang, Junke",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Naik, Tejas",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Wang, Ziyi",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Kilrain, Connor",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Buckwalter, Elijah H.",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Hou, Jiacheng",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Bueno, Saul Ibaven",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Wang, Shuheng",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Ma, Xinyue",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Liu, Yifan",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Tao, Zhiyuan",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Zhang, Ziheng",
      "affiliation": "The Ohio State University"
    },
    {
      "name": "Sokol, Eric",
      "affiliation": "National Ecological Observatory Network (NEON), Battelle"
    },
    {
      "name": "Belitz, Michael",
      "affiliation": "Michigan State University"
    },
    {
      "name": "Record, Sydne",
      "affiliation": "The University of Maine"
    },
    {
      "name": "Stewart, Charles V.",
      "affiliation": "Rensselaer Polytechnic Institute"
    },
    {
      "name": "Chao, Wei-Lun",
      "affiliation": "The Ohio State University"
    }
  ],
  "description": "Pipeline for processing large-scale tray images of pinned beetles: detect specimens, optionally sort and crop with metadata matching, and produce fine-grained morphological segmentation (5-class or 9-class). It uses an open-vocabulary detector (Grounding DINO), a vision-language model (LLaVA-NeXT) for verification, and fine-tuned Mask2Former for transformer-based part segmentation and downstream morphological analysis.",
  "keywords": [
    "deep learning",
    "computer vision",
    "image processing",
    "object detection",
    "image segmentation",
    "entomology",
    "imageomics"
  ],
  "license": {
    "id": "MIT"
  },
  "publication_date": "2026-07-07",
  "title": "BeetleFlow: An Integrative Deep Learning Pipeline for Beetle Image Processing",
  "version": "1.0.0",
  "grants": [
    {
      "id": "021nxhr62::2118240"
    }
  ],
  "references": [
    "East, A., Belitz, M., Cotton, L., Dominguez, J., Betancourt, I., Rayeed, S. M., Liu, F., Carlyn, D., Kilrain, C., Wu, J., Earl, C., Lapp, H., Perry, K. I., Stewart, C., Thompson, M. J., Campolongo, E. G., Chao, W.-L., Sokol, E. R., & Record, S. (2026). Beetles as Sentinel Taxa: Predicting drought conditions from NEON specimen imagery (Revision 5026be7). Hugging Face. https://doi.org/10.57967/hf/8716",
    "National Ecological Observatory Network. (2025). Ground beetles sampled from pitfall traps (DP1.10022.001). https://doi.org/10.48443/CD21-Q875",
    "National Ecological Observatory Network. (2025). NEON Field Site Metadata. Retrieved June 25, 2025, from https://www.neonscience.org/field-sites/exports/NEON_Field_Site_Metadata_20250625"
  ]
}