Add FHIR Resolution section to pkgdown documentation #61
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| on: | |
| push: | |
| branches: [main, master, develop] | |
| pull_request: | |
| branches: [main, master, develop] | |
| name: R-CMD-check | |
| jobs: | |
| # Core check - runs on all PRs and pushes | |
| # Tests R release and devel on ubuntu-latest for quick feedback | |
| R-CMD-check-core: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| name: ubuntu-latest (R ${{ matrix.r }}) | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 1 # Keep for API rate limiting | |
| matrix: | |
| r: ['release', 'devel'] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| OMOPHUB_API_KEY: ${{ secrets.OMOPHUB_API_KEY }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r }} | |
| http-user-agent: ${{ matrix.r == 'devel' && 'release' || '' }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::urlchecker | |
| needs: check | |
| cache-version: 2 | |
| - name: Check URLs | |
| if: matrix.r == 'release' | |
| run: | | |
| result <- tryCatch({ | |
| urlchecker::url_check() | |
| TRUE | |
| }, error = function(e) { | |
| message("URL check failed: ", conditionMessage(e)) | |
| FALSE | |
| }) | |
| if (!result) { | |
| quit(status = 1) | |
| } | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")' | |
| args: 'c("--as-cran", "--no-manual")' | |
| error-on: '"warning"' | |
| check-dir: '"check"' | |
| # Extended check - only on push to main/develop (not PRs) | |
| # Tests macOS, Windows, and oldrel-1 for full CRAN compliance | |
| R-CMD-check-extended: | |
| if: github.event_name == 'push' | |
| runs-on: ${{ matrix.config.os }} | |
| timeout-minutes: 25 | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| needs: [R-CMD-check-core] # Run after core completes | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 1 # Keep for API rate limiting | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| OMOPHUB_API_KEY: ${{ secrets.OMOPHUB_API_KEY }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| cache-version: 2 | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")' | |
| args: 'c("--as-cran", "--no-manual")' | |
| error-on: '"warning"' | |
| check-dir: '"check"' |