report.tex

%master_report.tex, can't be edited - Mark
% edit the content.tex file instead
\documentclass[a4paper,11pt,hidelinks]{report}
\usepackage[utf8]{inputenc}
\usepackage{amsmath}
\usepackage[titletoc,toc,page]{appendix}

\usepackage[english]{babel}
\usepackage{graphicx}
\usepackage{subcaption}
\usepackage{amssymb}
\usepackage{titlesec}
\usepackage{helvet}
\renewcommand{\familydefault}{\sfdefault}
\usepackage{calc}
\usepackage{amsfonts}
\usepackage{lipsum}
\usepackage[amsmath,amsthm,thmmarks]{ntheorem}
\usepackage{fancyvrb}
\usepackage{setspace}
\usepackage[T1]{fontenc}
\doublespacing
\usepackage{url}
\usepackage{letltxmacro}
%\usepackage{bigints}
\usepackage{soul}
\usepackage[top=20mm,left=20mm,right=20mm,bottom=20mm,footskip=25pt]{geometry} %was 0.14in, don't know why - Mark
\usepackage{fancyhdr}
\usepackage{footnote}
\usepackage{appendix}
\usepackage{siunitx}
\usepackage{multirow}
\usepackage{wrapfig}
\usepackage{textgreek}
\usepackage{longtable}
\usepackage{bigstrut}
\usepackage[table,dvipsnames]{xcolor}
\usepackage{pdfpages}
\usepackage{titling}
\usepackage{csquotes}
\usepackage{pbox}
\usepackage{booktabs}
\usepackage[export]{adjustbox}
\usepackage{array}
\newcolumntype{C}[1]{>{\centering\arraybackslash}p{#1}}
%\usepackage{pbox}
\usepackage{rotating}   % added by Mark for use in table
\usepackage{pifont}     % added by Mark to include tick symbols in table
\usepackage{listings}   % added by Xiaonan to include Matlab code
\lstset{
basicstyle=\small\ttfamily,
columns=flexible,
breaklines=true
}
\usepackage{caption}    % changed to caption / should still work
\usepackage{tocloft}    % added by Mark for TOC names
\usepackage{textcomp}
\setcounter{tocdepth}{4}
\setcounter{secnumdepth}{4}

%References & bibliography - add your own .bib files with \addbibresource command
\usepackage[backend=bibtex,style=numeric-comp,sorting=none]{biblatex}   % Disabled Sorting - Mark
\DeclareBibliographyAlias{webpage}{online}  %ignore warnings
\bibliography{bib}

\AtBeginDocument{\let\latexlabel\label}

\titleformat{\chapter}[hang]
{\normalfont\huge\bfseries}{\thechapter}{17.5pt}{\huge}
\titlespacing*{\chapter}{0pt}{-40pt}{0pt}
\titlespacing*{\section}{0pt}{0pt}{0pt}
\titlespacing*{\subsection}{0pt}{0pt}{0pt}
\titlespacing*{\subsubsection}{0pt}{0pt}{0pt}   %reduce spacing to fit with other stuff


%Remove the Page number from the part pages - Mark
\makeatletter
\renewcommand\part{%
    \if@openright
    \cleardoublepage
    \else
    \clearpage
    \fi
    \thispagestyle{empty}%   % Original »plain« replaced by »emptyx
    \addtocounter{page}{-1} %Decrease the page counter so the part page doesn't count, added by Mark
    \if@twocolumn
    \onecolumn
    \@tempswatrue
    \else
    \@tempswafalse
    \fi
    \null\vfil
    \secdef\@part\@spart}
\makeatother
% From http://tex.stackexchange.com/questions/54115/how-to-let-part-stay-solo-page-and-no-page-number


\newcommand\numberthis{\addtocounter{equation}{1}\tag{\theequation}}
% All sqrts closed
\LetLtxMacro{\oldsqrt}{\sqrt}
\renewcommand{\sqrt}[1][]{%
    \def\DHLindex{#1}\mathpalette\DHLhksqrt}
\def\DHLhksqrt#1#2{%
    \setbox0=\hbox{$#1\oldsqrt[\DHLindex]{#2\,}$}\dimen0=\ht0
    \advance\dimen0-0.2\ht0
    \setbox2=\hbox{\vrule height\ht0 depth -\dimen0}%
    {\box0\lower0.71pt\box2}}

\makeatletter
\newcommand*\@dblLabelI {}
\newcommand*\@dblLabelII {}
\newcommand*\@dblequationAux {}

\def\@dblequationAux #1,#2,%
{\def\@dblLabelI{\label{#1}}\def\@dblLabelII{\label{#2}}}

\newcommand*{\doubleequation}[3][]{%
    \par\vskip\abovedisplayskip\noindent
    \if\relax\detokenize{#1}\relax
    \let\@dblLabelI\@empty
    \let\@dblLabelII\@empty
    \else % we assume here that the optional argument
    % has the required shape A,B
    \@dblequationAux #1,%
    \fi
    \makebox[0.5\linewidth-1.5em]{%
        \hspace{\stretch2}%
        \makebox[0pt]{$\displaystyle #2$}%
        \hspace{\stretch1}%
    }%
    \makebox[0.5\linewidth-1.5em]{%
        \hspace{\stretch1}%
        \makebox[0pt]{$\displaystyle #3$}%
        \hspace{\stretch2}%
    }%
    \makebox[3em][r]{(%
        \refstepcounter{equation}\theequation\@dblLabelI,
        \refstepcounter{equation}\theequation\@dblLabelII)}%
    \par\vskip\belowdisplayskip
}
\makeatother
\renewcommand{\headrulewidth}{0pt}

% For multi-line cells - see http://tex.stackexchange.com/questions/2441/how-to-add-a-forced-line-break-inside-a-table-cell
\newcommand{\multicell}[2][c]{%
    \begin{tabular}[#1]{@{}c@{}}#2\end{tabular}}

\setlength{\headheight}{13.6pt}


%Toc indents and dimensions
\setlength{\cftsecindent}{1.5em}
\setlength{\cftsecnumwidth}{2.8em}

\setlength{\cftsubsecindent}{4.0em}
\setlength{\cftsubsecnumwidth}{3.6em}

\setlength{\cftsubsubsecindent}{7.4em}
\setlength{\cftsubsubsecnumwidth}{4.5em}

\usepackage{hyperref}

\pretitle{%
    \begin{center}
        %\LARGE
        \includegraphics[width=4.5cm]{Images/cover.jpg}\\ \Huge%[\bigskipamount]
    }
    \posttitle{\end{center}}

% Title Page
\title{Analysis of Activity Data from Smartphones}
\author{Jamieson Brynes, Somerville College}


\makeatletter
\renewcommand{\@pnumwidth}{2.3em}
\newcommand{\setauthor}[1]{%
    \addtocontents{toc}{\protect\@namedef{authortag}{#1}}%
}

\newcommand{\putafterpnum}{%
    \ifcsname authortag\endcsname
    \makebox[0pt][r]{\smash{\colorbox{white}{\strut\authortag}\hspace{\@pnumwidth}}}%
    \global\let\authortag\relax
    \fi
}

\renewcommand{\cftchapafterpnum}{\putafterpnum}
\renewcommand{\cftsecafterpnum}{\putafterpnum}
\renewcommand{\cftsubsecafterpnum}{\putafterpnum}
\renewcommand{\cftsubsubsecafterpnum}{\putafterpnum}

\makeatother

\begin{document}

\maketitle
\pagestyle{fancy}
\includepdf[pages={1}]{Text/authorship.pdf}
\include{Text/abstract}
\include{Text/introduction}
\include{Text/step_counter}
\include{Text/sleep_detection}
\include{Text/conclusion}
\printbibliography[title={References}]
\includepdf[pages={1}]{Text/risk_1.pdf}
\includepdf[pages={1}]{Text/risk_2.pdf}

\end{document}