Merge branch 'main' into addClickOrientationTransformUpdated

Author: joselfrias

.azure/azure-build-test-gpu-pipeline.yml

@@ -12,8 +12,24 @@
 __pycache__
 .idea
 .vscode
-
-Dockerfile
-sample-apps/**/model
-node_modules
 .webpack
+node_modules/
+*.log
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+.venv/
+ubuntu_venv/
+
+# apps
+sample-apps/*/logs
+sample-apps/*/train
+sample-apps/*/model
+docs/build
+docs/source/apidocs

.dockerignore

@@ -39,15 +39,16 @@ jobs:
       args: ${{ env.args }}
 
     # This job only runs for pull request comments
-    if: contains('\
-      Nic-Ma,\
-      SachidanandAlle,\
-      diazandr3s,\
-      tangy5,\
-      wyli,\
-      pxLi,\
-      YanxuanLiu,\
-      ', format('{0},', github.actor)) && github.event.comment.body == '/build'
+    if: |
+      github.event.comment.body == '/build' &&
+      (
+        github.actor == 'Nic-Ma' ||
+        github.actor == 'SachidanandAlle' ||
+        github.actor == 'diazandr3s' ||
+        github.actor == 'tangy5' ||
+        github.actor == 'wyli' ||
+        github.actor == 'wendell-hom'
+      )
     steps:
       - name: Check if comment is issued by authorized person
         run: blossom-ci
@@ -62,7 +63,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           repository: ${{ fromJson(needs.Authorization.outputs.args).repo }}
           ref: ${{ fromJson(needs.Authorization.outputs.args).ref }}

.github/workflows/blossom-ci.yml

@@ -49,11 +49,11 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v2
+      uses: github/codeql-action/init@v3
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -74,4 +74,4 @@ jobs:
     #    uses a compiled language
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v2
+      uses: github/codeql-action/analyze@v3

.github/workflows/codeql-analysis.yml

@@ -25,11 +25,11 @@ jobs:
     env:
       MONAI_ZOO_AUTH_TOKEN: ${{ github.token }}
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: 3.9
       - name: clean up
         run: |
           sudo rm -rf /usr/share/dotnet
@@ -39,6 +39,7 @@ jobs:
           python -m pip install --upgrade pip wheel
       - name: Build
         run: |
+          rm -rf /opt/hostedtoolcache
           docker --version
           cd plugins/dsa
           docker system prune -f

.github/workflows/docker-plugin.yml

@@ -27,26 +27,24 @@ jobs:
     env:
       MONAI_ZOO_AUTH_TOKEN: ${{ github.token }}
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v4
-        with:
-          python-version: 3.8
-      - name: clean up
+      - uses: actions/checkout@v4
+      - name: Cleanup
         run: |
-          sudo rm -rf /usr/share/dotnet
+          echo Before Cleanup...
+          df -h
           sudo rm -rf "$AGENT_TOOLSDIRECTORY"
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip wheel
+          rm -rf /opt/hostedtoolcache
+          rm -rf /usr/share/dotnet/
+          cd /opt
+          find . -maxdepth 1 -mindepth 1 '!' -path ./containerd '!' -path ./actionarchivecache '!' -path ./runner '!' -path ./runner-cache -exec rm -rf '{}' ';'
+          cd -
+          echo After Cleanup...
+          df -h
       - name: Build
         run: |
-          ./runtests.sh --clean
-          docker system prune -f
-          DOCKER_BUILDKIT=1 docker build -t projectmonai/monailabel:${{ github.event.inputs.tag || 'latest'  }} -f Dockerfile .
+          DOCKER_BUILDKIT=0 docker build -t projectmonai/monailabel:${{ github.event.inputs.tag || 'latest'  }} -f Dockerfile .
       - name: Verify
         run: |
-          ./runtests.sh --clean
           docker run --rm -i --ipc=host --net=host -v $(pwd):/workspace projectmonai/monailabel:${{ github.event.inputs.tag || 'latest'  }} /workspace/runtests.sh --net
       - name: Publish
         run: |