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chore: Comprehensive security audit and repository maintenance (#25)
This pull request primarily focuses on cleaning up dependencies, modernizing dynamic imports, and improving type safety and code maintainability throughout the codebase. The most significant changes include a major dependency cleanup in `package.json`, replacing synchronous `require` calls with asynchronous `import()` for better compatibility, and updating method signatures to use unused parameter conventions. Additionally, a demo file was removed, and compression logic was refactored for async support. **Dependency Cleanup and Configuration Changes** * Removed several unused or legacy dependencies from `package.json`, including `bcryptjs`, `cheerio`, `jimp`, `kafka-node`, `mongodb`, `mongoose`, `multer`, `pg`, and `sequelize`. Also removed commit tooling dependencies (`commitizen`, `cz-conventional-changelog`) and related config/husky hooks, streamlining the project dependencies and configuration. [[1]](diffhunk://#diff-7ae45ad102eab3b6d7e7896acd08c427a9b25b346470d7bc6507b6481575d519L110-L112) [[2]](diffhunk://#diff-7ae45ad102eab3b6d7e7896acd08c427a9b25b346470d7bc6507b6481575d519R121-L144) [[3]](diffhunk://#diff-7ae45ad102eab3b6d7e7896acd08c427a9b25b346470d7bc6507b6481575d519L175-L178) [[4]](diffhunk://#diff-7ae45ad102eab3b6d7e7896acd08c427a9b25b346470d7bc6507b6481575d519L222-L230) **Modernization of Dynamic Imports** * Updated dynamic module loading in `src/adapters/dynamic-adapter-loader.ts` and compression logic in `src/services/google-services/infrastructure/a2a-multimedia-protocol.ts` to use async `import()` instead of `require`, improving compatibility with ES modules and async workflows. [[1]](diffhunk://#diff-97bcb0453e5c52eb4053224d87c334f2021889986be7107056f11523ec7b2eceL358-R362) [[2]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL1920-R1936) [[3]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2007-R2029) [[4]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2041-R2040) [[5]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2052-R2051) **Codebase Maintenance and Type Safety** * Refactored multiple method signatures across adapters and agents to use unused parameter conventions (prefixing with `_`) for better clarity and to avoid unused variable warnings. This affects files such as `deepmind-adapter.ts`, `gemini-adapter.ts`, `jules-workflow-adapter.ts`, `unified-api.ts`, and `research-coordinator.ts`. [[1]](diffhunk://#diff-e3cb3105a8c253aa95f487f3a4411fa6238ca87cced34a77ef74689f3d2bdd4cL141-R141) [[2]](diffhunk://#diff-e3cb3105a8c253aa95f487f3a4411fa6238ca87cced34a77ef74689f3d2bdd4cL159-R159) [[3]](diffhunk://#diff-f483363a04d674e1aac6643a85b530fc417b8b8d118860ff94dfc65d20225cc3L58-R58) [[4]](diffhunk://#diff-f483363a04d674e1aac6643a85b530fc417b8b8d118860ff94dfc65d20225cc3L158-R158) [[5]](diffhunk://#diff-f483363a04d674e1aac6643a85b530fc417b8b8d118860ff94dfc65d20225cc3L176-R176) [[6]](diffhunk://#diff-5e8dd1ed5dd92845b2c39b6bf119074c5af7da276f9645a512b80fdf4d88714dL158-R158) [[7]](diffhunk://#diff-5e8dd1ed5dd92845b2c39b6bf119074c5af7da276f9645a512b80fdf4d88714dL181-R181) [[8]](diffhunk://#diff-6a8fc6178261a51c1547a28d6c14795e0917d16b7c850fe27ac2ae78f4b63af3L1123-R1121) [[9]](diffhunk://#diff-ceb122ff7fe4742a2e7848ef3786e17b77e57b65d5600ca9e8d3ce7d431fcbaaL974-R1014) [[10]](diffhunk://#diff-ceb122ff7fe4742a2e7848ef3786e17b77e57b65d5600ca9e8d3ce7d431fcbaaL1071-R1071) **Demo and Legacy Code Removal** * Deleted the `src/memory/demo-sqlite-fallback.ts` demo file, removing legacy demonstration code and reducing clutter in the codebase. **Compression Logic Refactoring** * Refactored the compression engine in `a2a-multimedia-protocol.ts` to support asynchronous compression/decompression methods for `lz4` and `zstd`, improving flexibility and error handling for optional libraries. [[1]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL1920-R1936) [[2]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2007-R2029) [[3]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2041-R2040) [[4]](diffhunk://#diff-d562b28f649af83eb6eda30222fc1d512f7df051f2e3db4f090a49a1c7b8550dL2052-R2051) Let me know if you want details on any specific change or how these updates might affect your workflow! Also: * Fix security vulnerabilities and modernize CommonJS imports Co-authored-by: clduab11 <185000089+clduab11@users.noreply.github.com> * Remove unused dependencies and fix linting issues Co-authored-by: clduab11 <185000089+clduab11@users.noreply.github.com> * Major cleanup: Move test files and remove obsolete demo code Co-authored-by: clduab11 <185000089+clduab11@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: clduab11 <185000089+clduab11@users.noreply.github.com> Co-authored-by: clduab11 <chrisldukes@gmail.com>
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‎package-lock.json‎

Lines changed: 7967 additions & 13147 deletions
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‎package.json‎

Lines changed: 20 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -107,9 +107,7 @@
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"@types/config": "^3.3.3",
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"async": "^3.2.4",
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"axios": "^1.6.0",
110-
"bcryptjs": "^2.4.3",
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"bull": "^4.12.2",
112-
"cheerio": "^1.0.0-rc.12",
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"compression": "^1.7.4",
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"config": "^3.3.9",
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"cors": "^2.8.5",
@@ -120,28 +118,23 @@
120118
"ffmpeg-static": "^5.2.0",
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"google-auth-library": "^10.2.1",
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"helmet": "^7.1.0",
121+
"inquirer": "^12.9.4",
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"ioredis": "^5.3.2",
124-
"jimp": "^0.22.10",
125123
"joi": "^17.11.0",
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"jsonwebtoken": "^9.0.2",
127-
"kafka-node": "^5.0.0",
128125
"lodash": "^4.17.21",
129126
"moment": "^2.29.4",
130-
"mongodb": "^6.2.0",
131-
"mongoose": "^8.0.1",
132-
"multer": "^1.4.5-lts.1",
133127
"node-fetch": "^3.3.2",
128+
"ora": "^6.3.1",
134129
"p-queue": "^7.4.1",
135130
"p-retry": "^5.1.2",
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"p-timeout": "^6.1.2",
137-
"pg": "^8.11.3",
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"pino": "^8.16.1",
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"pino-pretty": "^10.2.3",
140134
"prom-client": "^15.0.0",
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"rate-limiter-flexible": "^4.0.1",
142136
"redis": "^4.6.10",
143137
"rxjs": "^7.8.1",
144-
"sequelize": "^6.35.0",
145138
"socket.io": "^4.7.4",
146139
"socket.io-client": "^4.7.4",
147140
"uuid": "^9.0.1",
@@ -172,10 +165,8 @@
172165
"@typescript-eslint/eslint-plugin": "^6.9.1",
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"@typescript-eslint/parser": "^6.9.1",
174167
"babel-jest": "^29.7.0",
175-
"commitizen": "^3.0.0",
176168
"concurrently": "^8.2.2",
177169
"cross-env": "^7.0.3",
178-
"cz-conventional-changelog": "^3.0.1",
179170
"eslint": "^8.53.0",
180171
"eslint-config-prettier": "^9.0.0",
181172
"eslint-plugin-import": "^2.29.0",
@@ -219,13 +210,27 @@
219210
"husky": {
220211
"hooks": {
221212
"pre-commit": "lint-staged",
222-
"commit-msg": "commitizen",
223213
"pre-push": "npm run test:unit && npm run lint"
224214
}
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},
226-
"config": {
227-
"commitizen": {
228-
"path": "cz-conventional-changelog"
216+
217+
"jest": {
218+
"preset": "ts-jest",
219+
"testEnvironment": "node",
220+
"collectCoverageFrom": [
221+
"src/**/*.{js,ts}",
222+
"!src/**/*.d.ts",
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"!src/benchmarks/**/*.js",
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"!src/examples/**/*.js"
225+
],
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"coverageThreshold": {
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"global": {
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"branches": 75,
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"functions": 75,
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"lines": 75,
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"statements": 75
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}
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}
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},
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"browserslist": [

‎src/adapters/deepmind-adapter.ts‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -138,7 +138,7 @@ export class DeepMindAdapter extends BaseModelAdapter {
138138

139139
protected transformResponse(
140140
response: any,
141-
request: ModelRequest,
141+
_request: ModelRequest,
142142
): ModelResponse {
143143
return {
144144
id: this.generateRequestId(),
@@ -156,7 +156,7 @@ export class DeepMindAdapter extends BaseModelAdapter {
156156
};
157157
}
158158

159-
protected handleError(error: any, request: ModelRequest): never {
159+
protected handleError(error: any, _request: ModelRequest): never {
160160
const adapterError = this.createError(
161161
error.message || "DeepMind API error",
162162
error.code || "DEEPMIND_ERROR",

‎src/adapters/dynamic-adapter-loader.ts‎

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Original file line numberDiff line numberDiff line change
@@ -355,7 +355,11 @@ export class DynamicAdapterLoader extends EventEmitter {
355355
} catch {
356356
// Check if it's available in the package.json
357357
try {
358-
const packageJson = require(process.cwd() + "/package.json");
358+
const fs = await import("fs");
359+
const path = await import("path");
360+
const packageJsonPath = path.join(process.cwd(), "package.json");
361+
const packageJsonContent = await fs.promises.readFile(packageJsonPath, 'utf-8');
362+
const packageJson = JSON.parse(packageJsonContent);
359363
const allDeps = {
360364
...packageJson.dependencies,
361365
...packageJson.devDependencies,

‎src/adapters/gemini-adapter.ts‎

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Original file line numberDiff line numberDiff line change
@@ -57,7 +57,7 @@ export class GeminiAdapter extends BaseModelAdapter {
5757

5858
try {
5959
// Transform request for Gemini API
60-
const transformedRequest = this.transformRequest(request);
60+
this.transformRequest(request);
6161

6262
// Mock response for TDD
6363
const mockResponse = {
@@ -157,7 +157,7 @@ export class GeminiAdapter extends BaseModelAdapter {
157157

158158
protected transformResponse(
159159
response: any,
160-
request: ModelRequest,
160+
_request: ModelRequest,
161161
): ModelResponse {
162162
return {
163163
id: this.generateRequestId(),
@@ -175,7 +175,7 @@ export class GeminiAdapter extends BaseModelAdapter {
175175
};
176176
}
177177

178-
protected handleError(error: any, request: ModelRequest): never {
178+
protected handleError(error: any, _request: ModelRequest): never {
179179
const adapterError = this.createError(
180180
error.message || "Gemini API error",
181181
error.code || "GEMINI_ERROR",

‎src/adapters/jules-workflow-adapter.ts‎

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Original file line numberDiff line numberDiff line change
@@ -157,7 +157,7 @@ export class JulesWorkflowAdapter extends BaseModelAdapter {
157157

158158
protected transformResponse(
159159
response: any,
160-
request: ModelRequest,
160+
_request: ModelRequest,
161161
): ModelResponse {
162162
return {
163163
id: this.generateRequestId(),
@@ -180,7 +180,7 @@ export class JulesWorkflowAdapter extends BaseModelAdapter {
180180
};
181181
}
182182

183-
protected handleError(error: any, request: ModelRequest): never {
183+
protected handleError(error: any, _request: ModelRequest): never {
184184
const adapterError = this.createError(
185185
error.message || "Jules workflow error",
186186
error.code || "WORKFLOW_ERROR",

‎src/adapters/unified-api.ts‎

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Original file line numberDiff line numberDiff line change
@@ -31,8 +31,10 @@ import {
3131
AudioStreamResponse,
3232
MultiModalChunk,
3333
StreamingSession,
34+
StreamingContext,
3435
EdgeCacheConfig,
3536
CDNConfiguration,
37+
3638
} from "../types/streaming.js";
3739

3840
export interface UnifiedAPIConfig {
@@ -1121,7 +1123,7 @@ export class UnifiedAPI extends EventEmitter {
11211123
async adaptStreamQuality(
11221124
sessionId: string,
11231125
streamId: string,
1124-
targetQuality?: any,
1126+
_targetQuality?: any,
11251127
): Promise<boolean> {
11261128
if (!this.streamingAPI) {
11271129
return false;

‎src/agents/research-coordinator.ts‎

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Original file line numberDiff line numberDiff line change
@@ -9,7 +9,6 @@ import { EventEmitter } from "events";
99
import { Logger } from "../utils/logger.js";
1010
import { SecurityOptimizationManager } from "../core/security-optimization-manager.js";
1111
import crypto from "crypto";
12-
import axios from "axios";
1312

1413
// Research interfaces
1514
export interface ResearchHypothesis {
@@ -971,48 +970,48 @@ export class ResearchCoordinator extends EventEmitter {
971970
}
972971

973972
// Additional placeholder methods would be implemented with actual AI logic
974-
private async suggestMethodology(params: any): Promise<string> {
973+
private async suggestMethodology(_params: any): Promise<string> {
975974
return "Experimental design with randomized controlled trial";
976975
}
977-
private async predictOutcomes(params: any): Promise<string[]> {
976+
private async predictOutcomes(_params: any): Promise<string[]> {
978977
return ["Positive correlation expected", "Effect size: medium"];
979978
}
980-
private async defineSucessCriteria(params: any): Promise<string[]> {
979+
private async defineSucessCriteria(_params: any): Promise<string[]> {
981980
return ["p < 0.05", "Effect size > 0.3"];
982981
}
983-
private async assessHypothesisConfidence(params: any): Promise<number> {
982+
private async assessHypothesisConfidence(_params: any): Promise<number> {
984983
return 0.75;
985984
}
986985
private async addToKnowledgeGraph(
987-
hypothesis: ResearchHypothesis,
988-
type: string,
986+
_hypothesis: ResearchHypothesis,
987+
_type: string,
989988
): Promise<void> {
990989
/* Implementation */
991990
}
992991
private async initializeValidationFramework(
993-
hypothesis: ResearchHypothesis,
992+
_hypothesis: ResearchHypothesis,
994993
): Promise<void> {
995994
/* Implementation */
996995
}
997996

998997
// More placeholder methods...
999998
private async selectResearchDesign(
1000-
hypothesis: ResearchHypothesis,
999+
_hypothesis: ResearchHypothesis,
10011000
): Promise<string> {
10021001
return "Randomized Controlled Trial";
10031002
}
10041003
private async calculateSampleSize(
1005-
hypothesis: ResearchHypothesis,
1004+
_hypothesis: ResearchHypothesis,
10061005
): Promise<number> {
10071006
return 100;
10081007
}
10091008
private async identifyControls(
1010-
hypothesis: ResearchHypothesis,
1009+
_hypothesis: ResearchHypothesis,
10111010
): Promise<string[]> {
10121011
return ["Placebo control", "Time control"];
10131012
}
10141013
private async selectStatisticalTests(
1015-
hypothesis: ResearchHypothesis,
1014+
_hypothesis: ResearchHypothesis,
10161015
): Promise<string[]> {
10171016
return ["t-test", "ANOVA"];
10181017
}
@@ -1068,8 +1067,8 @@ export class ResearchCoordinator extends EventEmitter {
10681067
}
10691068

10701069
private async searchSingleDatabase(
1071-
db: AcademicDatabase,
1072-
query: any,
1070+
_db: AcademicDatabase,
1071+
_query: any,
10731072
): Promise<ResearchPaper[]> {
10741073
// Implementation would make actual API calls to each database
10751074
// This is a simplified mock implementation

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