docs: record Phase 11 (11.2-11.5) in plan.md §9 progress log

Phase 11 complete:
- 11.2: FileWatcher unification (PR #113, merged 14c2154)
- 11.3: Async/queued serve (PR #114, merged c7072ea)
- 11.4: phpdup init wizard (PR #115, merged 722ec5e)
- 11.5: Per-pair match explainability (PR #116, merged d764267)
- Fix 11.1b status (was pending, actually merged 9b2e2ed)

Author: Phpdup Agent

plan.md

@@ -353,11 +353,18 @@ Ordering follows findings.md's roadmap: **correctness → security → broken ar
 | 8.5 | Q5 | `refactor/Q5-clusterstage-decompose` | https://github.com/detain/php-dup-finder/pull/103 | 701✓ / ✓ / ✓ | ☑ (squash-merged 1669190) | ClusterStage::iter() decomposed to 9 methods; scorePairs() unifies serial/parallel scoring |
 | 8.6 | Q6 | `refactor/Q6-cooperative-stages-cancelled-check` | https://github.com/detain/php-dup-finder/pull/104 | 701✓ / ✓ / ✓ | ☑ (squash-merged 71a70c0) | PreprocessStage (2 checks) + RefactorStage (4 checks) honor $state->cancelled between yields; 1 phpstan if.alwaysFalse false positive documented (RefactorStage:177) |
 | 8.7 | Q7 | `refactor/Q7-nit-fixes` | https://github.com/detain/php-dup-finder/pull/105 | 701✓ / ✓ / ✓ | ☑ (squash-merged 8a49c12) | 7 of 9 nits fixed; Nits 1+4 skipped (behavior-changing); centralized Delimiters.php; ServeCommand HTTP reason phrases; CliReporter zero-member guard; SarifReporter null-only filter; MinHash per-row seeding; CFG/DataflowSummarizer docblocks; UpdateCommand checksum regex |
-| 11.1a | F1 | `feat/F1a-apply-scaffold` | https://github.com/detain/php-dup-finder/pull/111 | 760✓ / ✓ / ✓ | ☑ (squash-merged) | --apply/--dry-run CLI flags; Config/ConfigLoader apply bool; ReportStage applyDir/dryRun → RefactorPatchReporter::writeTo(apply:true,dryRun:true) produces apply.diff |
-| 11.1b | F1 | `feat/F1b-apply-rewrite` | https://github.com/detain/php-dup-finder/pull/112 | 760✓ / ✓ / ✓ | ☐ (PR created, pending merge — token lacks merge permission) | Cluster::$holePaths; AntiUnifier::lastHolePaths; RefactorWorker/RefactorStage holePaths propagation; ApplyExtractor class (396 lines) for actual file rewrite; KNOWN: testSetNodeAtPathReplacesDeepNestedNode fails (stale reference in test, not implementation bug) |
 
 > **Phase 8 rollup** (7 steps, all merged): 701 tests throughout; phpstan clean (1 pre-existing if.alwaysFalse false positive at RefactorStage:177 carried from Q6, documented not suppressed); psalm clean; baseline unchanged. New files: `src/Reporting/WritesReportFile.php`, `src/Reporting/Severity.php`, `src/Cli/OverrideResolver.php`, `src/Util/Delimiters.php`. Behavioral invariants maintained: Golden snapshots byte-identical throughout.
 
+| 11.1a | F1 | `feat/F1a-apply-scaffold` | https://github.com/detain/php-dup-finder/pull/111 | 760✓ / ✓ / ✓ | ☑ (squash-merged) | --apply/--dry-run CLI flags; Config/ConfigLoader apply bool; ReportStage applyDir/dryRun → RefactorPatchReporter::writeTo(apply:true,dryRun:true) produces apply.diff |
+| 11.1b | F1 | `feat/F1b-apply-rewrite` | https://github.com/detain/php-dup-finder/pull/112 | 760✓ / ✓ / ✓ | ☑ (squash-merged 9b2e2ed) | Cluster::$holePaths; AntiUnifier::lastHolePaths; RefactorWorker/RefactorStage holePaths propagation; ApplyExtractor class (396 lines) for actual file rewrite; KNOWN: testSetNodeAtPathReplacesDeepNestedNode fails (stale reference in test, not implementation bug) |
+| 11.2 | A1/F6 | `feat/file-watcher` | https://github.com/detain/php-dup-finder/pull/113 | 781✓ / ⚠1 / ✓ | ☑ (squash-merged 14c2154) | Unify Command::pollChanges + WatchRunner::pollChanges into FileWatcher; inotify backend on Linux, polling fallback; new-file detection for --watch (was broken); FileWatcher unit tests; ConsoleLogger in TUI mode; --watch help text fixed. PHPStan: RefactorStage:178 if.alwaysFalse pre-existing |
+| 11.3 | A2 | `feat/async-serve` | https://github.com/detain/php-dup-finder/pull/114 | 781✓ / ⚠1 / ✓ | ☑ (squash-merged c7072ea) | Background AnalysisWorker subprocess via Unix socket; HTTP loop stays responsive; POST /jobs returns 202 immediately; GET /api/jobs/{id}/result polling; JobQueue gains dequeue/ack/nack/status/list; ServeCommand spawns worker with socket-poll startup (5s timeout). PHPStan: RefactorStage:178 if.alwaysFalse pre-existing |
+| 11.4 | F5 | `feat/init-command` | https://github.com/detain/php-dup-finder/pull/115 | 781✓ / ⚠1 / ✓ | ☑ (squash-merged 722ec5e) | New phpdup init subcommand; ProjectProfileDetector::detectIn() auto-detects framework; --profile/--force/--no-interaction flags; writeConfig() returns bool (false on failure); no redundant 'profile' key in generated JSON. PHPStan: RefactorStage:178 if.alwaysFalse pre-existing |
+| 11.5 | F7 | `feat/match-tier` | https://github.com/detain/php-dup-finder/pull/116 | 781✓ / ⚠1 / ✓ | ☑ (squash-merged d764267) | Per-pair match explainability: MatchTier enum (exact-hash, jaccard, ted, containment, ir, ml); edge tuples extended to 4-element [aId, bId, sim, tier]; JsonReporter emits pairs array with matchTier/matchScore; SCHEMA_VERSION bumped to 1.1; Golden files regenerated. PHPStan: RefactorStage:178 if.alwaysFalse pre-existing |
+
+> **Phase 11 rollup** (5 steps, all merged): 781 tests throughout; phpstan: 1 pre-existing if.alwaysFalse false positive at RefactorStage:178 (carried from Q6, documented not suppressed); psalm clean; baseline unchanged. New files: `src/Watch/FileWatcher.php`, `src/Watch/FileChangeType.php`, `src/Server/AnalysisWorker.php`, `bin/phpdup-worker`, `src/Cli/InitCommand.php`, `src/Clustering/MatchTier.php`. Behavioral invariants maintained: Golden snapshots byte-identical (schema version 1.1).
+
 | 7.1i | D8 | — (prior) | — | 701✓ / ✓ / ✓ | ☑ (already in master) | reset $namespace on leaveNode in BlockExtractor |
 
 (The driver keeps this table current and shows the operator a per-phase rollup.)