Merge pull request #34 from eds-book/main

Upgrade "Learning the underlying physics of a simulation model of the ocean’s temperature (CIRC23)" notebook to JB2

Author: acocac

.binder/environment.yml

@@ -8,8 +8,8 @@ dependencies:
   - matplotlib
   - scikit-learn==1.3.*
   - scikit-image
-  - intake
-  - intake-xarray
+  - intake==0.7.0
+  - intake-xarray== 0.7.0
   - netcdf4
   - h5netcdf
   - s3fs

.bumpversion.cfg

@@ -1,11 +1,11 @@
 [bumpversion]
-current_version = v1.0.19
+current_version = v2025.05.0
 commit = True
 tag = True
 parse = (v(?P<major>\d+))(.(?P<minor>\d+))(.(?P<patch>\d+))
 serialize = v{major}.{minor}.{patch}
 
-[bumpversion:file:CITATION.cff]
+[bumpversion:file:myst.yml]
 
 [bumpversion:file:notebook.ipynb]
 search = "print('Notebook repository version: {current_version}')\n"

.github/config.json

@@ -1,30 +1,9 @@
-# Reference https://mybinder.readthedocs.io/en/latest/howto/gh-actions-badges.html
-name: Test this PR on Binder Badge
+name: test-binder
+
 on:
   pull_request_target:
     types: [opened]
 
-permissions:
-  pull-requests:
-    write
-
 jobs:
   binder:
-    runs-on: ubuntu-latest
-    steps:
-    - name: comment on PR with Binder link
-      uses: actions/github-script@v3
-      with:
-        github-token: ${{secrets.GITHUB_TOKEN}}
-        script: |
-          var PR_HEAD_USERREPO = process.env.PR_HEAD_USERREPO;
-          var PR_HEAD_REF = process.env.PR_HEAD_REF;
-          github.issues.createComment({
-            issue_number: context.issue.number,
-            owner: context.repo.owner,
-            repo: context.repo.repo,
-            body: `[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/${PR_HEAD_USERREPO}/${PR_HEAD_REF}) :point_left: Test this PR on Binder`
-          })
-      env:
-        PR_HEAD_REF: ${{ github.event.pull_request.head.ref }}
-        PR_HEAD_USERREPO: ${{ github.event.pull_request.head.repo.full_name }}
+    uses: eds-book/notebooks-workflows/.github/workflows/binder.yaml@main

.github/workflows/binder.yaml

@@ -0,0 +1,12 @@
+name: monthly-build
+
+on:
+  schedule:
+    - cron: "0 9 1 * *" # At 09:00 UTC on the 1st of each month
+
+jobs:
+  build-and-execute:
+    uses: eds-book/notebooks-workflows/.github/workflows/build.yaml@main
+    secrets:
+      QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
+      QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }}

.github/workflows/build.yaml

@@ -0,0 +1,18 @@
+name: publish
+
+on:
+  push:
+    branches: [main, postprint]
+    paths-ignore:
+      - 'README.md'
+
+jobs:
+  build-and-execute:
+    uses: eds-book/notebooks-workflows/.github/workflows/build.yaml@main
+    secrets:
+      QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
+      QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }}
+
+  deploy:
+    needs: build-and-execute
+    uses: eds-book/notebooks-workflows/.github/workflows/deploy.yaml@main

.github/workflows/monthly-build.yaml

@@ -1,44 +1,8 @@
-name: Test container image build
+name: test-container
 
 on:
   pull_request:
 
 jobs:
   test-build:
-    runs-on: ubuntu-latest
-    if: github.repository_owner == 'eds-book-gallery'
-    steps:
-
-    # For biggish images, github actions runs out of disk space.
-    # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use
-    # https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150
-    # and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104
-    # This gives us a total of about 52G of free space, which should be enough for now
-    - name: cleanup disk space
-      run: |
-        sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc
-        df -h
-
-    - name: checkout files in repo
-      uses: actions/checkout@main
-
-      # Set quay image name
-    - name: Get properties from the config file
-      id: config_file
-      uses: notiz-dev/github-action-json-property@release
-      with:
-        path: '.github/config.json'
-        prop_path: 'quay_image'
-
-    - name: Build the image and push it if `NO_PUSH` disabled
-      uses: jupyterhub/repo2docker-action@master
-      with: # make sure username & password/token matches your registry
-        NO_PUSH: "true"
-        DOCKER_REGISTRY: ${{steps.config_quay.outputs.prop}}
-
-        # Uncomment and modify the following line with your image name. a
-        IMAGE_NAME: "environmental_ds_book/test2i2c" 
-
-    # Lets us monitor disks getting full as images get bigger over time
-    - name: Show how much disk space is left
-      run: df -h
+    uses: eds-book/notebooks-workflows/.github/workflows/test.yaml@main