Dear Gavin,
We are very happy to use the algorithms that your group has developed for mapping CNA and LOH in tumor samples, especially TitanCNA. I would appreciate having a piece of advice :
Given the output from TitanCNA, which criteria shall I apply on LogR and BAF in order to annotate the CNA/LOH as : homozygous deletion, heterozygous deletion, diploid, copy number gain, copy-number amplification, copy-number LOH ?
I am looking forward to hearing from you,
Thanks so much,
Bogdan
Dear Gavin,
We are very happy to use the algorithms that your group has developed for mapping CNA and LOH in tumor samples, especially TitanCNA. I would appreciate having a piece of advice :
Given the output from TitanCNA, which criteria shall I apply on LogR and BAF in order to annotate the CNA/LOH as : homozygous deletion, heterozygous deletion, diploid, copy number gain, copy-number amplification, copy-number LOH ?
I am looking forward to hearing from you,
Thanks so much,
Bogdan