Release v0.5.0 (#221)

Cherrypick v0.5.0 to public

Author: mingxin-zheng

.dockerignore

@@ -0,0 +1,47 @@
+# Build and installation
+build/
+build-*/
+install/
+install-*/
+dist/
+_CPack_Packages/
+
+# Data
+data/
+
+# Utilities and metadata
+aggregate_metadata.json
+
+# CI
+ci/
+
+# Python
+**/__pycache__
+*.pyc
+
+# Development environment
+.venv/
+.vscode-server/
+ngc-cli/
+CTestConfig.cmake
+
+# Cache and temporary directories
+.cache/
+.cupy/
+.cmake/
+.docker/
+.config/
+.local/
+tmp/
+
+# History and user files
+.bash_history
+.python_history
+.wget-hsts
+.viminfo
+.lesshst
+
+# Version control
+.git/
+.gitignore
+.github/

.github/ISSUE_TEMPLATE/bug-report.md

@@ -12,14 +12,15 @@ A clear and concise description of what the bug is.
 
 🛠️ **To Reproduce**
 Steps to reproduce the behavior:
+
 1. Go to '...'
 2. Run '...'
 3. See error
 
 💻 **Expected behavior**
 What should happen instead?
 
-📸 **Screenshots / Logs **
+📸 **Screenshots / Logs**
 Add screenshots or relevant error logs.
 
 📝  Additional context

tools/check_missing_license.sh .github/check_missing_license.shtools/check_missing_license.sh renamed to .github/check_missing_license.sh

@@ -12,6 +12,9 @@
         },
         {
             "pattern": "https://developer.nvidia.com/cuda-downloads"
+        },
+        {
+            "pattern": "https://www.omg.org/spec/IDL/"
         }
     ],
     "timeout": "20s",

.github/markdown-link-check.json

@@ -1,3 +1,3 @@
-Fixes #ISSUE_NUMBER
+# Fixes #ISSUE_NUMBER
 
-### Description
+## Description

.github/pull_request_template.md

@@ -46,7 +46,9 @@ jobs:
            github.actor == 'masoudmoghani' ||
            github.actor == 'maximilianofir' ||
            github.actor == 'mahdiazizian' ||
-           github.actor == 'mimiliaogo'
+           github.actor == 'mimiliaogo' ||
+           github.actor == 'mingxueg-nv' ||
+           github.actor == 'tbirdso'
          )
 
     steps:

.github/workflows/blossom-ci.yml

@@ -15,4 +15,4 @@ jobs:
 
       - name: Run copyright check
         run: |
-          bash tools/check_missing_license.sh
+          bash .github/check_missing_license.sh

.github/workflows/copyright.yml

@@ -135,6 +135,7 @@ venv/
 ENV/
 env.bak/
 venv.bak/
+!**/config/env/
 
 
 # Training data
@@ -213,17 +214,14 @@ third_party/
 
 
 # third-party files
-holoscan_i4h/install
-holoscan_i4h/build
+workflows/robotic_ultrasound/scripts/holoscan_ops/install
+workflows/robotic_ultrasound/scripts/holoscan_ops/build
 build/
 install/
 
 # Raytracing Ultrasound Simulator
 workflows/robotic_ultrasound/scripts/raysim
 
-# Bring Your Own XR
-openxr/
-
 # Holohub CLI
 utilities
 cmake
@@ -238,6 +236,12 @@ cmake
 # Dev container
 .devcontainer/
 
-# License file
+# License files
 *.lic
 *.dat
+rti/
+
+.bash_history
+.python_history
+.nv
+.keras

.gitignore

@@ -0,0 +1,6 @@
+# markdownlint configuration for i4h-workflows
+# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md
+MD013:
+  line_length: 800
+  code_block_line_length: 800
+  heading_line_length: 800

.markdownlint.yaml

@@ -4,32 +4,49 @@ ci:
   autoupdate_schedule: quarterly
 
 repos:
+  # pre-commit hooks
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v4.5.0
     hooks:
       - id: check-merge-conflict
       - id: trailing-whitespace
       - id: check-yaml
       - id: end-of-file-fixer
+        exclude: '\.svg$'
       - id: mixed-line-ending
+  # ruff
   - repo: https://github.com/astral-sh/ruff-pre-commit
     rev: v0.5.2
     hooks:
+      - id: ruff-format
+        exclude: |
+            (?x)^(
+                workflows/telesurgery/cmake/pybind11/__init__.py
+            )$
       - id: ruff
-        entry: ruff check
+        args: [--fix]
         exclude: |
             (?x)^(
                 workflows/telesurgery/cmake/pybind11/__init__.py
             )$
+  # isort
   - repo: https://github.com/pycqa/isort
     rev: 6.0.0
     hooks:
       - id: isort
         name: isort (python)
-        args: [--check-only]
+  # codespell
   - repo: https://github.com/codespell-project/codespell
     rev: v2.2.6
     hooks:
       - id: codespell
+        exclude: '\.svg$'
         additional_dependencies:
         - tomli
+  # markdownlint
+  - repo: https://github.com/igorshubovych/markdownlint-cli
+    rev: v0.47.0
+    hooks:
+      - id: markdownlint
+        args: [--fix, --config, .markdownlint.yaml]
+        files: ^.*\.md$