-
Notifications
You must be signed in to change notification settings - Fork 45
208 lines (168 loc) · 5.94 KB
/
Copy pathci.yml
File metadata and controls
208 lines (168 loc) · 5.94 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
name: CI
on:
push:
branches: [main]
tags: ["v*"]
pull_request:
branches: [main]
jobs:
# -------------------------------------------------------------------------
# Job 1: Lint + format check
# -------------------------------------------------------------------------
lint:
name: Lint (ruff)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v3
with:
enable-cache: true
- name: Sync dependencies
run: uv sync --group dev --locked
- name: Run ruff check
run: uv run ruff check .
- name: Run ruff format check
run: uv run ruff format --check .
# -------------------------------------------------------------------------
# Job 2: Type checking
# -------------------------------------------------------------------------
typecheck:
name: Typecheck (mypy)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v3
with:
enable-cache: true
- name: Sync dependencies
run: uv sync --group dev --locked
- name: Run mypy
run: uv run mypy cca_zoo
# -------------------------------------------------------------------------
# Job 3: Tests (fast, no slow markers)
# -------------------------------------------------------------------------
test:
name: Test Python ${{ matrix.python-version }} on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12", "3.13"]
os: [ubuntu-latest, macos-latest]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install uv
uses: astral-sh/setup-uv@v3
with:
enable-cache: true
- name: Sync dependencies
run: uv sync --group dev --locked --python ${{ matrix.python-version }}
- name: Run fast tests
run: uv run pytest -m "not slow" --cov=cca_zoo --cov-report=xml
# Only the modules importable without optional heavy deps (torch,
# xgboost, numpyro/jax) — same rationale as the "not slow" filter
# above. Runs once since doctest results don't vary by interpreter.
- name: Run doctests
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest'
run: |
uv run pytest --doctest-modules --no-cov \
cca_zoo/linear cca_zoo/nonparametric cca_zoo/datasets cca_zoo/model_selection
- name: Upload coverage
uses: codecov/codecov-action@v4
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest'
with:
files: coverage.xml
fail_ci_if_error: false
# -------------------------------------------------------------------------
# Job 4: Slow tests (deep / probabilistic / tree — optional heavy deps)
# -------------------------------------------------------------------------
test-slow:
name: Test slow (deep, probabilistic, tree)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v3
with:
enable-cache: true
- name: Sync dependencies
run: uv sync --group dev --extra deep --extra probabilistic --extra tree --locked
- name: Run slow tests
run: uv run pytest -m slow --cov=cca_zoo --cov-report=xml
- name: Run doctests
run: |
uv run pytest --doctest-modules --no-cov \
cca_zoo/deep cca_zoo/probabilistic cca_zoo/tree
- name: Upload coverage
uses: codecov/codecov-action@v4
with:
files: coverage.xml
fail_ci_if_error: false
# -------------------------------------------------------------------------
# Job 5: Build documentation
# -------------------------------------------------------------------------
docs:
name: Build docs (MkDocs)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v3
with:
enable-cache: true
- name: Sync dependencies
run: uv sync --extra docs --locked
- name: Build docs
run: uv run mkdocs build --strict
- name: Deploy to GitHub Pages
if: github.event_name == 'push' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v'))
uses: peaceiris/actions-gh-pages@v4
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: ./site
# -------------------------------------------------------------------------
# Publish job (triggered by version tags)
# -------------------------------------------------------------------------
publish:
name: Publish to PyPI
needs: [lint, typecheck, test]
runs-on: ubuntu-latest
if: startsWith(github.ref, 'refs/tags/v')
permissions:
id-token: write # OIDC Trusted Publishing — no API secrets needed
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v3
- name: Build
run: |
uv pip install --system hatchling
python -m hatchling build
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1