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<h1 class="title toc-ignore">Step 03 - Create Tables</h1>
<h4 class="author">Jesse Lecy</h4>
</div>
<div id="TOC">
<ul>
<li><a href="#math-of-effect-size">MATH OF EFFECT SIZE</a></li>
<li><a href="#load-data">LOAD DATA</a></li>
<li><a href="#baseline-case">BASELINE CASE</a>
<ul>
<li><a href="#baseline-model">Baseline Model</a></li>
<li><a href="#create-baseline-function">Create Baseline
Function</a></li>
<li><a href="#baseline-rates">Baseline Rates</a></li>
<li><a href="#calc-effect-function">Calc Effect Function</a></li>
<li><a href="#example-effect">Example Effect</a></li>
<li><a href="#examine-effect-sizes-of-each-variable">Examine Effect
Sizes of Each Variable</a></li>
<li><a href="#plot-of-effects">Plot of Effects</a></li>
</ul></li>
<li><a href="#arts">ARTS</a></li>
<li><a href="#health">HEALTH</a></li>
<li><a href="#human-services">HUMAN SERVICES</a></li>
<li><a href="#public">PUBLIC</a></li>
<li><a href="#education">EDUCATION</a></li>
<li><a href="#other">OTHER</a></li>
<li><a href="#all-models">ALL MODELS</a></li>
<li><a href="#table-of-effects">TABLE OF EFFECTS</a>
<ul>
<li><a href="#stargazer-of-effects-table">Stargazer of Effects
Table</a></li>
</ul></li>
</ul>
</div>
<div id="math-of-effect-size" class="section level1">
<h1>MATH OF EFFECT SIZE</h1>
<p>Here we define effect size as the increase or decrease in probability
of professionalization when a specific covariate is present.</p>
<p>Typically we look at the median time to success/failure
(professionalization) as the average effect, and then compare all
effects to the average. In this case, we don’t have a long enough panel
to calculate the median time to success, so we have a choice:</p>
<ul>
<li>Use the model that fits</li>
<li>Compare cases at age=5 since this is the last data point we
have.</li>
</ul>
<p><span class="math display">\[ h_j = \frac{1}{1 + e^{-(a_1D_1 + a_2D_2
+ ... + a_jD_j + X\beta ) }} \]</span></p>
<p>The baseline hazard rate then for any particular time j is calculated
as:</p>
<p><span class="math display">\[ h_j = \frac{1}{1 + e^{-(a_jD_j ) }}
\]</span></p>
<p>And the effect size of a binary covariate at that period would
be:</p>
<p><span class="math display">\[ h_j = \frac{1}{1 + e^{-(a_jD_j +
\beta_1 \cdot ProfessionalFundraising) }} \]</span></p>
<p>Where you compare the case where ProfFundraising=1 to the case where
ProfFundraising=0.</p>
<p>For continuous covariates, like HHI, you would compare the case where
the covariate equals the mean, to a case where the covariate is at the
mean plus a standard deviation, or conversely a case at the 25th
percentile (low HHI) to 75th percentile (high HHI).</p>
<p>The effect in these cases will represent the change in probability of
professionalization as a result of the covariate.</p>
</div>
<div id="load-data" class="section level1">
<h1>LOAD DATA</h1>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a>dat <span class="ot"><-</span> <span class="fu">readRDS</span>( <span class="st">"./Data/CompleteHazardSpells.rds"</span> )</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="co"># copy original dataset</span></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a>dat.original <span class="ot"><-</span> dat</span></code></pre></div>
</div>
<div id="baseline-case" class="section level1">
<h1>BASELINE CASE</h1>
<div id="baseline-model" class="section level2">
<h2>Baseline Model</h2>
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a>m.all <span class="ot"><-</span> <span class="fu">glm</span>( <span class="at">formula=</span> prof <span class="sc">~</span> D1 <span class="sc">+</span> D2 <span class="sc">+</span> D3 <span class="sc">+</span> D4 <span class="sc">+</span> D5 <span class="sc">+</span> D6 <span class="sc">+</span> Accrual <span class="sc">+</span> GovtMoneyRat <span class="sc">+</span> HHI <span class="sc">+</span> </span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a> UNAgrand <span class="sc">+</span> FixedCostRat <span class="sc">+</span> SurplusRat_ndrop_w892 <span class="sc">+</span> EqRat_w_K <span class="sc">+</span> </span>
<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a> ProfFundFeeYes <span class="sc">-</span> <span class="dv">1</span>, </span>
<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a> <span class="at">data=</span>dat, <span class="at">family=</span><span class="fu">binomial</span>(<span class="st">"logit"</span>) )</span></code></pre></div>
<pre><code>## Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred</code></pre>
<div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a>m.all <span class="sc">%>%</span> tidy <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">digits=</span><span class="dv">3</span> )</span></code></pre></div>
<table>
<thead>
<tr class="header">
<th align="left">term</th>
<th align="right">estimate</th>
<th align="right">std.error</th>
<th align="right">statistic</th>
<th align="right">p.value</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">D1</td>
<td align="right">-19.205</td>
<td align="right">174.151</td>
<td align="right">-0.110</td>
<td align="right">0.912</td>
</tr>
<tr class="even">
<td align="left">D2</td>
<td align="right">-1.391</td>
<td align="right">0.107</td>
<td align="right">-13.039</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">D3</td>
<td align="right">-1.162</td>
<td align="right">0.104</td>
<td align="right">-11.147</td>
<td align="right">0.000</td>
</tr>
<tr class="even">
<td align="left">D4</td>
<td align="right">-1.390</td>
<td align="right">0.107</td>
<td align="right">-13.015</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">D5</td>
<td align="right">-1.562</td>
<td align="right">0.112</td>
<td align="right">-14.007</td>
<td align="right">0.000</td>
</tr>
<tr class="even">
<td align="left">D6</td>
<td align="right">-1.617</td>
<td align="right">0.114</td>
<td align="right">-14.242</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">Accrual</td>
<td align="right">0.611</td>
<td align="right">0.054</td>
<td align="right">11.254</td>
<td align="right">0.000</td>
</tr>
<tr class="even">
<td align="left">GovtMoneyRat</td>
<td align="right">1.269</td>
<td align="right">0.096</td>
<td align="right">13.169</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">HHI</td>
<td align="right">-0.526</td>
<td align="right">0.111</td>
<td align="right">-4.751</td>
<td align="right">0.000</td>
</tr>
<tr class="even">
<td align="left">UNAgrand</td>
<td align="right">0.001</td>
<td align="right">0.000</td>
<td align="right">5.573</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">FixedCostRat</td>
<td align="right">0.247</td>
<td align="right">0.173</td>
<td align="right">1.428</td>
<td align="right">0.153</td>
</tr>
<tr class="even">
<td align="left">SurplusRat_ndrop_w892</td>
<td align="right">1.904</td>
<td align="right">0.083</td>
<td align="right">22.879</td>
<td align="right">0.000</td>
</tr>
<tr class="odd">
<td align="left">EqRat_w_K</td>
<td align="right">0.001</td>
<td align="right">0.000</td>
<td align="right">5.071</td>
<td align="right">0.000</td>
</tr>
<tr class="even">
<td align="left">ProfFundFeeYes</td>
<td align="right">1.065</td>
<td align="right">0.110</td>
<td align="right">9.708</td>
<td align="right">0.000</td>
</tr>
</tbody>
</table>
</div>
<div id="create-baseline-function" class="section level2">
<h2>Create Baseline Function</h2>
<div class="sourceCode" id="cb5"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="co"># df is data frame of specific subsector</span></span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="co"># mod is the model that was run</span></span>
<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a>createBaseline <span class="ot"><-</span> <span class="cf">function</span>( df, mod )</span>
<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a>{</span>
<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a> <span class="co"># only IVs in the model</span></span>
<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a> td <span class="ot"><-</span> df[ , <span class="fu">c</span>(<span class="st">"Accrual"</span>,<span class="st">"GovtMoneyRat"</span>,<span class="st">"HHI"</span>,<span class="st">"UNAgrand"</span>,<span class="st">"FixedCostRat"</span>,</span>
<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a> <span class="st">"SurplusRat_ndrop_w892"</span>,<span class="st">"EqRat_w_K"</span>,<span class="st">"ProfFundFeeYes"</span>) ]</span>
<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a> period1 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-14"><a href="#cb5-14" aria-hidden="true" tabindex="-1"></a> period2 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-15"><a href="#cb5-15" aria-hidden="true" tabindex="-1"></a> period3 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-16"><a href="#cb5-16" aria-hidden="true" tabindex="-1"></a> period4 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-17"><a href="#cb5-17" aria-hidden="true" tabindex="-1"></a> period5 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-18"><a href="#cb5-18" aria-hidden="true" tabindex="-1"></a> period6 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb5-19"><a href="#cb5-19" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-20"><a href="#cb5-20" aria-hidden="true" tabindex="-1"></a> <span class="co"># period1[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-21"><a href="#cb5-21" aria-hidden="true" tabindex="-1"></a> <span class="co"># period2[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-22"><a href="#cb5-22" aria-hidden="true" tabindex="-1"></a> <span class="co"># period3[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-23"><a href="#cb5-23" aria-hidden="true" tabindex="-1"></a> <span class="co"># period4[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-24"><a href="#cb5-24" aria-hidden="true" tabindex="-1"></a> <span class="co"># period5[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-25"><a href="#cb5-25" aria-hidden="true" tabindex="-1"></a> <span class="co"># period6[12] <- median( dat$SurplusRat_ndrop_w892, na.rm=T )</span></span>
<span id="cb5-26"><a href="#cb5-26" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-27"><a href="#cb5-27" aria-hidden="true" tabindex="-1"></a> <span class="co"># period1 <- c(1,0,0,0,0,0, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-28"><a href="#cb5-28" aria-hidden="true" tabindex="-1"></a> <span class="co"># period2 <- c(0,1,0,0,0,0, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-29"><a href="#cb5-29" aria-hidden="true" tabindex="-1"></a> <span class="co"># period3 <- c(0,0,1,0,0,0, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-30"><a href="#cb5-30" aria-hidden="true" tabindex="-1"></a> <span class="co"># period4 <- c(0,0,0,1,0,0, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-31"><a href="#cb5-31" aria-hidden="true" tabindex="-1"></a> <span class="co"># period5 <- c(0,0,0,0,1,0, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-32"><a href="#cb5-32" aria-hidden="true" tabindex="-1"></a> <span class="co"># period6 <- c(0,0,0,0,0,1, 0,0,0.54,0,0,-0.49853,1.9,0)</span></span>
<span id="cb5-33"><a href="#cb5-33" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-34"><a href="#cb5-34" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-35"><a href="#cb5-35" aria-hidden="true" tabindex="-1"></a> h1 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period1 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-36"><a href="#cb5-36" aria-hidden="true" tabindex="-1"></a> h2 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period2 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-37"><a href="#cb5-37" aria-hidden="true" tabindex="-1"></a> h3 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period3 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-38"><a href="#cb5-38" aria-hidden="true" tabindex="-1"></a> h4 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period4 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-39"><a href="#cb5-39" aria-hidden="true" tabindex="-1"></a> h5 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period5 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-40"><a href="#cb5-40" aria-hidden="true" tabindex="-1"></a> h6 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period6 <span class="sc">*</span> mod<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb5-41"><a href="#cb5-41" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-42"><a href="#cb5-42" aria-hidden="true" tabindex="-1"></a> hrc <span class="ot"><-</span> <span class="fu">data.frame</span>( <span class="at">age=</span><span class="dv">1</span><span class="sc">:</span><span class="dv">6</span>, <span class="at">hazard.rate=</span><span class="fu">round</span>(<span class="fu">c</span>(h1,h2,h3,h4,h5,h6),<span class="dv">4</span>) ) </span>
<span id="cb5-43"><a href="#cb5-43" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-44"><a href="#cb5-44" aria-hidden="true" tabindex="-1"></a> src <span class="ot"><-</span> <span class="fu">cumprod</span>( (<span class="dv">1</span><span class="sc">-</span>hrc<span class="sc">$</span>hazard.rate))</span>
<span id="cb5-45"><a href="#cb5-45" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-46"><a href="#cb5-46" aria-hidden="true" tabindex="-1"></a> hrc <span class="ot"><-</span> <span class="fu">cbind</span>( hrc, <span class="at">survival.rate=</span>src )</span>
<span id="cb5-47"><a href="#cb5-47" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-48"><a href="#cb5-48" aria-hidden="true" tabindex="-1"></a> hrc</span>
<span id="cb5-49"><a href="#cb5-49" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb5-50"><a href="#cb5-50" aria-hidden="true" tabindex="-1"></a>}</span></code></pre></div>
</div>
<div id="baseline-rates" class="section level2">
<h2>Baseline Rates</h2>
<div class="sourceCode" id="cb6"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a>hrc <span class="ot"><-</span> <span class="fu">createBaseline</span>( <span class="at">df=</span>dat.original, <span class="at">mod=</span>m.all )</span>
<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb6-3"><a href="#cb6-3" aria-hidden="true" tabindex="-1"></a><span class="co"># dput( hrc )</span></span>
<span id="cb6-4"><a href="#cb6-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb6-5"><a href="#cb6-5" aria-hidden="true" tabindex="-1"></a><span class="co"># hrt <- calc.effect( model=m.all, df=dat, variable.name="Accrual", quant=1 ) </span></span>
<span id="cb6-6"><a href="#cb6-6" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb6-7"><a href="#cb6-7" aria-hidden="true" tabindex="-1"></a><span class="co"># hrc %>% pander</span></span>
<span id="cb6-8"><a href="#cb6-8" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb6-9"><a href="#cb6-9" aria-hidden="true" tabindex="-1"></a><span class="fu">saveRDS</span>( hrc, <span class="st">"./Data/BaselineVitalRates.rds"</span> )</span>
<span id="cb6-10"><a href="#cb6-10" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb6-11"><a href="#cb6-11" aria-hidden="true" tabindex="-1"></a><span class="fu">stargazer</span>( hrc, <span class="at">summary=</span><span class="cn">FALSE</span>, <span class="at">type=</span><span class="st">"html"</span>, <span class="at">out=</span><span class="st">"./Results/BaseVitalRates.doc"</span> )</span></code></pre></div>
<table style="text-align:center">
<tr>
<td colspan="4" style="border-bottom: 1px solid black">
</td>
</tr>
<tr>
<td style="text-align:left">
</td>
<td>
age
</td>
<td>
hazard.rate
</td>
<td>
survival.rate
</td>
</tr>
<tr>
<td colspan="4" style="border-bottom: 1px solid black">
</td>
</tr>
<tr>
<td style="text-align:left">
1
</td>
<td>
1
</td>
<td>
0
</td>
<td>
1
</td>
</tr>
<tr>
<td style="text-align:left">
2
</td>
<td>
2
</td>
<td>
0.090
</td>
<td>
0.909
</td>
</tr>
<tr>
<td style="text-align:left">
3
</td>
<td>
3
</td>
<td>
0.111
</td>
<td>
0.808
</td>
</tr>
<tr>
<td style="text-align:left">
4
</td>
<td>
4
</td>
<td>
0.090
</td>
<td>
0.735
</td>
</tr>
<tr>
<td style="text-align:left">
5
</td>
<td>
5
</td>
<td>
0.077
</td>
<td>
0.678
</td>
</tr>
<tr>
<td style="text-align:left">
6
</td>
<td>
6
</td>
<td>
0.074
</td>
<td>
0.629
</td>
</tr>
<tr>
<td colspan="4" style="border-bottom: 1px solid black">
</td>
</tr>
</table>
</div>
<div id="calc-effect-function" class="section level2">
<h2>Calc Effect Function</h2>
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="co"># prof ~ D1 + D2 + D3 + D4 + D5 + D6 + Accrual + GovtMoneyRat + </span></span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a><span class="co"># HHI + UNAgrand + FixedCostRat + SurplusRat_ndrop_w892 + EqRat_w_K + </span></span>
<span id="cb7-3"><a href="#cb7-3" aria-hidden="true" tabindex="-1"></a><span class="co"># ProfFundFeeYes - 1</span></span>
<span id="cb7-4"><a href="#cb7-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a><span class="co"># CALC EFFECTS AT 25th and 75th percentiles, or 0 to 1 for binary</span></span>
<span id="cb7-7"><a href="#cb7-7" aria-hidden="true" tabindex="-1"></a><span class="co"># Accrual - 0 to 1</span></span>
<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a><span class="co"># GovMoneyRat - 0 to 0.5</span></span>
<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a><span class="co"># HHI 0.54 to 0.99</span></span>
<span id="cb7-10"><a href="#cb7-10" aria-hidden="true" tabindex="-1"></a><span class="co"># UNAgrand 0 to 44.8</span></span>
<span id="cb7-11"><a href="#cb7-11" aria-hidden="true" tabindex="-1"></a><span class="co"># FixedCostRat 0 to 0.06221</span></span>
<span id="cb7-12"><a href="#cb7-12" aria-hidden="true" tabindex="-1"></a><span class="co"># SurplusRat_ndrop_w892 -0.49853 to 0.14060</span></span>
<span id="cb7-13"><a href="#cb7-13" aria-hidden="true" tabindex="-1"></a><span class="co"># EqRat_w_K 1.9 to 24912</span></span>
<span id="cb7-14"><a href="#cb7-14" aria-hidden="true" tabindex="-1"></a><span class="co"># ProfFundFeeYes 0 to 1</span></span>
<span id="cb7-15"><a href="#cb7-15" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-16"><a href="#cb7-16" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-17"><a href="#cb7-17" aria-hidden="true" tabindex="-1"></a>calc.effect <span class="ot"><-</span> <span class="cf">function</span>( model, df, variable.name, quant )</span>
<span id="cb7-18"><a href="#cb7-18" aria-hidden="true" tabindex="-1"></a>{</span>
<span id="cb7-19"><a href="#cb7-19" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-20"><a href="#cb7-20" aria-hidden="true" tabindex="-1"></a> td <span class="ot"><-</span> df[ , <span class="fu">c</span>(<span class="st">"Accrual"</span>,<span class="st">"GovtMoneyRat"</span>,<span class="st">"HHI"</span>,<span class="st">"UNAgrand"</span>,<span class="st">"FixedCostRat"</span>,</span>
<span id="cb7-21"><a href="#cb7-21" aria-hidden="true" tabindex="-1"></a> <span class="st">"SurplusRat_ndrop_w892"</span>,<span class="st">"EqRat_w_K"</span>,<span class="st">"ProfFundFeeYes"</span>) ]</span>
<span id="cb7-22"><a href="#cb7-22" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-23"><a href="#cb7-23" aria-hidden="true" tabindex="-1"></a> period1 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-24"><a href="#cb7-24" aria-hidden="true" tabindex="-1"></a> period2 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-25"><a href="#cb7-25" aria-hidden="true" tabindex="-1"></a> period3 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-26"><a href="#cb7-26" aria-hidden="true" tabindex="-1"></a> period4 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-27"><a href="#cb7-27" aria-hidden="true" tabindex="-1"></a> period5 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>,<span class="dv">0</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-28"><a href="#cb7-28" aria-hidden="true" tabindex="-1"></a> period6 <span class="ot"><-</span> <span class="fu">c</span>( <span class="fu">c</span>(<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">0</span>,<span class="dv">1</span>), <span class="fu">unlist</span>( <span class="fu">lapply</span>( td, quantile, <span class="fl">0.50</span>, <span class="at">na.rm=</span>T ) ) )</span>
<span id="cb7-29"><a href="#cb7-29" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-30"><a href="#cb7-30" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-31"><a href="#cb7-31" aria-hidden="true" tabindex="-1"></a> coef.names <span class="ot"><-</span> <span class="fu">c</span>(<span class="st">"D1"</span>,<span class="st">"D2"</span>,<span class="st">"D3"</span>,<span class="st">"D4"</span>,<span class="st">"D5"</span>,<span class="st">"D6"</span>,<span class="st">"Accrual"</span>,<span class="st">"GovtMoneyRat"</span>, </span>
<span id="cb7-32"><a href="#cb7-32" aria-hidden="true" tabindex="-1"></a> <span class="st">"HHI"</span>,<span class="st">"UNAgrand"</span>,<span class="st">"FixedCostRat"</span>,<span class="st">"SurplusRat_ndrop_w892"</span>, </span>
<span id="cb7-33"><a href="#cb7-33" aria-hidden="true" tabindex="-1"></a> <span class="st">"EqRat_w_K"</span>,<span class="st">"ProfFundFeeYes"</span> )</span>
<span id="cb7-34"><a href="#cb7-34" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-35"><a href="#cb7-35" aria-hidden="true" tabindex="-1"></a> this.one <span class="ot"><-</span> <span class="fu">which</span>( coef.names <span class="sc">==</span> variable.name )</span>
<span id="cb7-36"><a href="#cb7-36" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-37"><a href="#cb7-37" aria-hidden="true" tabindex="-1"></a> new.value <span class="ot"><-</span> <span class="fu">quantile</span>( df[,variable.name], quant, <span class="at">na.rm=</span>T )</span>
<span id="cb7-38"><a href="#cb7-38" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-39"><a href="#cb7-39" aria-hidden="true" tabindex="-1"></a> period1[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-40"><a href="#cb7-40" aria-hidden="true" tabindex="-1"></a> period2[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-41"><a href="#cb7-41" aria-hidden="true" tabindex="-1"></a> period3[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-42"><a href="#cb7-42" aria-hidden="true" tabindex="-1"></a> period4[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-43"><a href="#cb7-43" aria-hidden="true" tabindex="-1"></a> period5[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-44"><a href="#cb7-44" aria-hidden="true" tabindex="-1"></a> period6[ this.one ] <span class="ot"><-</span> new.value</span>
<span id="cb7-45"><a href="#cb7-45" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-46"><a href="#cb7-46" aria-hidden="true" tabindex="-1"></a> h1 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period1 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-47"><a href="#cb7-47" aria-hidden="true" tabindex="-1"></a> h2 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period2 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-48"><a href="#cb7-48" aria-hidden="true" tabindex="-1"></a> h3 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period3 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-49"><a href="#cb7-49" aria-hidden="true" tabindex="-1"></a> h4 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period4 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-50"><a href="#cb7-50" aria-hidden="true" tabindex="-1"></a> h5 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period5 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-51"><a href="#cb7-51" aria-hidden="true" tabindex="-1"></a> h6 <span class="ot"><-</span> ( <span class="dv">1</span> <span class="sc">/</span> ( <span class="dv">1</span> <span class="sc">+</span> <span class="fu">exp</span>(<span class="sc">-</span>( <span class="fu">sum</span>(period6 <span class="sc">*</span> model<span class="sc">$</span>coefficients) )) ) )</span>
<span id="cb7-52"><a href="#cb7-52" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-53"><a href="#cb7-53" aria-hidden="true" tabindex="-1"></a> hrt <span class="ot"><-</span> <span class="fu">data.frame</span>( <span class="at">age=</span><span class="dv">1</span><span class="sc">:</span><span class="dv">6</span>, <span class="at">hazard.rate=</span><span class="fu">round</span>( <span class="fu">c</span>(h1,h2,h3,h4,h5,h6), <span class="dv">4</span>) ) </span>
<span id="cb7-54"><a href="#cb7-54" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-55"><a href="#cb7-55" aria-hidden="true" tabindex="-1"></a> srt <span class="ot"><-</span> <span class="fu">cumprod</span>( (<span class="dv">1</span><span class="sc">-</span>hrt<span class="sc">$</span>hazard.rate))</span>
<span id="cb7-56"><a href="#cb7-56" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-57"><a href="#cb7-57" aria-hidden="true" tabindex="-1"></a> hrt <span class="ot"><-</span> <span class="fu">cbind</span>( hrt, <span class="at">survival.rate=</span>srt )</span>
<span id="cb7-58"><a href="#cb7-58" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-59"><a href="#cb7-59" aria-hidden="true" tabindex="-1"></a> hrt</span>
<span id="cb7-60"><a href="#cb7-60" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb7-61"><a href="#cb7-61" aria-hidden="true" tabindex="-1"></a>}</span></code></pre></div>
</div>
<div id="example-effect" class="section level2">
<h2>Example Effect</h2>
<div class="sourceCode" id="cb8"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "ACCRUAL"</span></span>
<span id="cb8-2"><a href="#cb8-2" aria-hidden="true" tabindex="-1"></a>hrt <span class="ot"><-</span> <span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"Accrual"</span>, <span class="at">quant=</span><span class="dv">1</span> )</span>
<span id="cb8-3"><a href="#cb8-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb8-4"><a href="#cb8-4" aria-hidden="true" tabindex="-1"></a><span class="fu">saveRDS</span>( hrt, <span class="st">"./Data/AdjustedVitalRates.rds"</span> )</span>
<span id="cb8-5"><a href="#cb8-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb8-6"><a href="#cb8-6" aria-hidden="true" tabindex="-1"></a><span class="co"># dput( hrt )</span></span></code></pre></div>
</div>
<div id="examine-effect-sizes-of-each-variable" class="section level2">
<h2>Examine Effect Sizes of Each Variable</h2>
<div class="sourceCode" id="cb9"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="co"># prof ~ D1 + D2 + D3 + D4 + D5 + D6 + Accrual + GovtMoneyRat + </span></span>
<span id="cb9-2"><a href="#cb9-2" aria-hidden="true" tabindex="-1"></a><span class="co"># HHI + UNAgrand + FixedCostRat + SurplusRat_ndrop_w892 + EqRat_w_K + </span></span>
<span id="cb9-3"><a href="#cb9-3" aria-hidden="true" tabindex="-1"></a><span class="co"># ProfFundFeeYes - 1</span></span>
<span id="cb9-4"><a href="#cb9-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb9-5"><a href="#cb9-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb9-6"><a href="#cb9-6" aria-hidden="true" tabindex="-1"></a><span class="co"># CALC EFFECTS AT 25th and 75th percentiles, or 0 to 1 for binary</span></span>
<span id="cb9-7"><a href="#cb9-7" aria-hidden="true" tabindex="-1"></a><span class="co"># Accrual - 0 to 1</span></span>
<span id="cb9-8"><a href="#cb9-8" aria-hidden="true" tabindex="-1"></a><span class="co"># GovMoneyRat - 0 to 0.5</span></span>
<span id="cb9-9"><a href="#cb9-9" aria-hidden="true" tabindex="-1"></a><span class="co"># HHI 0.54 to 0.99</span></span>
<span id="cb9-10"><a href="#cb9-10" aria-hidden="true" tabindex="-1"></a><span class="co"># UNAgrand 0 to 44.8</span></span>
<span id="cb9-11"><a href="#cb9-11" aria-hidden="true" tabindex="-1"></a><span class="co"># FixedCostRat 0 to 0.06221</span></span>
<span id="cb9-12"><a href="#cb9-12" aria-hidden="true" tabindex="-1"></a><span class="co"># SurplusRat_ndrop_w892 -0.49853 to 0.14060</span></span>
<span id="cb9-13"><a href="#cb9-13" aria-hidden="true" tabindex="-1"></a><span class="co"># EqRat_w_K 1.9 to 24912</span></span>
<span id="cb9-14"><a href="#cb9-14" aria-hidden="true" tabindex="-1"></a><span class="co"># ProfFundFeeYes 0 to 1</span></span>
<span id="cb9-15"><a href="#cb9-15" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb9-16"><a href="#cb9-16" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb9-17"><a href="#cb9-17" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb9-18"><a href="#cb9-18" aria-hidden="true" tabindex="-1"></a><span class="co"># "BASELINE MODEL"</span></span>
<span id="cb9-19"><a href="#cb9-19" aria-hidden="true" tabindex="-1"></a>hrc <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"BASELINE MODEL"</span> )</span></code></pre></div>
<table>
<caption>BASELINE MODEL</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.0905</td>
<td align="right">0.9095000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.1112</td>
<td align="right">0.8083636</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.0905</td>
<td align="right">0.7352067</td>
</tr>
<tr class="odd">
<td align="right">5</td>
<td align="right">0.0773</td>
<td align="right">0.6783752</td>
</tr>
<tr class="even">
<td align="right">6</td>
<td align="right">0.0735</td>
<td align="right">0.6285146</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "ACCRUAL"</span></span>
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a><span class="fu">quantile</span>( dat<span class="sc">$</span>Accrual, <span class="fu">c</span>(<span class="fl">0.05</span>,<span class="fl">0.25</span>,<span class="fl">0.5</span>,<span class="fl">0.75</span>,<span class="fl">0.95</span>,<span class="fl">0.99</span>,<span class="dv">1</span>) )</span></code></pre></div>
<pre><code>## 5% 25% 50% 75% 95% 99% 100%
## 0 0 0 0 1 1 1</code></pre>
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb12-1"><a href="#cb12-1" aria-hidden="true" tabindex="-1"></a><span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"Accrual"</span>, <span class="at">quant=</span><span class="dv">1</span> ) <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"ACCRUAL"</span> )</span></code></pre></div>
<table>
<caption>ACCRUAL</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.1549</td>
<td align="right">0.8451000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.1873</td>
<td align="right">0.6868128</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.1550</td>
<td align="right">0.5803568</td>
</tr>
<tr class="odd">
<td align="right">5</td>
<td align="right">0.1337</td>
<td align="right">0.5027631</td>
</tr>
<tr class="even">
<td align="right">6</td>
<td align="right">0.1275</td>
<td align="right">0.4386608</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb13"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "GovtMoneyRat"</span></span>
<span id="cb13-2"><a href="#cb13-2" aria-hidden="true" tabindex="-1"></a><span class="fu">quantile</span>( dat<span class="sc">$</span>GovtMoneyRat, <span class="fu">c</span>(<span class="fl">0.05</span>,<span class="fl">0.25</span>,<span class="fl">0.5</span>,<span class="fl">0.75</span>,<span class="fl">0.95</span>,<span class="fl">0.99</span>,<span class="dv">1</span>) )</span></code></pre></div>
<pre><code>## 5% 25% 50% 75% 95% 99% 100%
## 0.0000000 0.0000000 0.0000000 0.0000000 0.3717799 0.9745395 1.0000000</code></pre>
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb15-1"><a href="#cb15-1" aria-hidden="true" tabindex="-1"></a><span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"GovtMoneyRat"</span>, <span class="at">quant=</span><span class="fl">0.99</span> ) <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"GovtMoneyRat"</span> )</span></code></pre></div>
<table>
<caption>GovtMoneyRat</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.2551</td>
<td align="right">0.7449000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.3010</td>
<td align="right">0.5206851</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.2553</td>
<td align="right">0.3877542</td>
</tr>
<tr class="odd">
<td align="right">5</td>
<td align="right">0.2239</td>
<td align="right">0.3009360</td>
</tr>
<tr class="even">
<td align="right">6</td>
<td align="right">0.2145</td>
<td align="right">0.2363853</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb16"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "HHI"</span></span>
<span id="cb16-2"><a href="#cb16-2" aria-hidden="true" tabindex="-1"></a><span class="fu">quantile</span>( dat<span class="sc">$</span>HHI, <span class="fu">c</span>(<span class="fl">0.05</span>,<span class="fl">0.25</span>,<span class="fl">0.5</span>,<span class="fl">0.75</span>,<span class="fl">0.95</span>,<span class="fl">0.99</span>,<span class="dv">1</span>) )</span></code></pre></div>
<pre><code>## 5% 25% 50% 75% 95% 99% 100%
## 0.0000000 0.4948592 0.8477306 1.0000000 1.0000000 1.0000000 1.0000000</code></pre>
<div class="sourceCode" id="cb18"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb18-1"><a href="#cb18-1" aria-hidden="true" tabindex="-1"></a><span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"HHI"</span>, <span class="at">quant=</span><span class="fl">0.99</span> ) <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"HHI"</span> )</span></code></pre></div>
<table>
<caption>HHI</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.0841</td>
<td align="right">0.9159000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.1035</td>
<td align="right">0.8211044</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.0842</td>
<td align="right">0.7519674</td>
</tr>
<tr class="odd">
<td align="right">5</td>
<td align="right">0.0718</td>
<td align="right">0.6979761</td>
</tr>
<tr class="even">
<td align="right">6</td>
<td align="right">0.0682</td>
<td align="right">0.6503741</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb19"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb19-1"><a href="#cb19-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "UNAgrand" </span></span>
<span id="cb19-2"><a href="#cb19-2" aria-hidden="true" tabindex="-1"></a><span class="fu">quantile</span>( dat<span class="sc">$</span>UNAgrand, <span class="fu">c</span>(<span class="fl">0.05</span>,<span class="fl">0.25</span>,<span class="fl">0.5</span>,<span class="fl">0.75</span>,<span class="fl">0.95</span>,<span class="fl">0.99</span>,<span class="dv">1</span>) )</span></code></pre></div>
<pre><code>## 5% 25% 50% 75% 95% 99%
## 0.00000 0.00000 0.00000 0.00000 69.87122 368.26164
## 100%
## 21027.46519</code></pre>
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb21-1"><a href="#cb21-1" aria-hidden="true" tabindex="-1"></a><span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"UNAgrand"</span>, <span class="at">quant=</span><span class="fl">0.99</span> ) <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"UNAgrand"</span> )</span></code></pre></div>
<table>
<caption>UNAgrand</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.1215</td>
<td align="right">0.8785000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.1481</td>
<td align="right">0.7483942</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.1216</td>
<td align="right">0.6573894</td>
</tr>
<tr class="odd">
<td align="right">5</td>
<td align="right">0.1043</td>
<td align="right">0.5888237</td>
</tr>
<tr class="even">
<td align="right">6</td>
<td align="right">0.0993</td>
<td align="right">0.5303535</td>
</tr>
</tbody>
</table>
<div class="sourceCode" id="cb22"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb22-1"><a href="#cb22-1" aria-hidden="true" tabindex="-1"></a><span class="co"># "FixedCostRat"</span></span>
<span id="cb22-2"><a href="#cb22-2" aria-hidden="true" tabindex="-1"></a><span class="fu">quantile</span>( dat<span class="sc">$</span>FixedCostRat, <span class="fu">c</span>(<span class="fl">0.05</span>,<span class="fl">0.25</span>,<span class="fl">0.5</span>,<span class="fl">0.75</span>,<span class="fl">0.95</span>,<span class="fl">0.99</span>,<span class="dv">1</span>) )</span></code></pre></div>
<pre><code>## 5% 25% 50% 75% 95% 99% 100%
## 0.0000000 0.0000000 0.0000000 0.0000000 0.2457897 0.5985855 1.0000000</code></pre>
<div class="sourceCode" id="cb24"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb24-1"><a href="#cb24-1" aria-hidden="true" tabindex="-1"></a><span class="fu">calc.effect</span>( <span class="at">model=</span>m.all, <span class="at">df=</span>dat, <span class="at">variable.name=</span><span class="st">"FixedCostRat"</span>, <span class="at">quant=</span><span class="fl">0.99</span> ) <span class="sc">%>%</span> <span class="fu">kable</span>( <span class="at">caption=</span><span class="st">"FixedCostRat"</span> )</span></code></pre></div>
<table>
<caption>FixedCostRat</caption>
<thead>
<tr class="header">
<th align="right">age</th>
<th align="right">hazard.rate</th>
<th align="right">survival.rate</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="right">1</td>
<td align="right">0.0000</td>
<td align="right">1.0000000</td>
</tr>
<tr class="even">
<td align="right">2</td>
<td align="right">0.1034</td>
<td align="right">0.8966000</td>
</tr>
<tr class="odd">
<td align="right">3</td>
<td align="right">0.1266</td>
<td align="right">0.7830904</td>
</tr>
<tr class="even">
<td align="right">4</td>
<td align="right">0.1035</td>
<td align="right">0.7020406</td>
</tr>
<tr class="odd">